LLM Mart Basic
@llm-mart · Joined Jun 2026
Featurizes molecules for machine learning with molfeat — ECFP/MACCS/MAP4 fingerprints, RDKit and Mordred physicochemical descriptors, pharmacophore and shape descriptors, and pretrained embeddings (ChemBERTa, ChemGPT, CheMeleon) exposed as scikit-learn transformers that convert S
Queries the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biomedical relationships across genes, drugs, diseases, phenotypes, pathways, and biological processes. Use when exploring drug-disease or gene-disease links, building disease-centric knowledge subgraphs, or
Loads Therapeutics Data Commons (TDC, PyTDC) AI-ready drug-discovery datasets and benchmarks — ADME, toxicity, drug-target interaction (DTI), scaffold splits, and molecular oracles for therapeutic ML and pharmacological prediction. Use when fetching a standardized benchmark datas
Provides the RDKit cheminformatics toolkit for low-level, fine-grained molecular primitives — SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure/SMARTS search, 2D/3D coordinate generation, similarity, and reaction handling. Use when custom sanitization,
Drives the Rowan cloud quantum-chemistry platform via its Python API for computational chemistry — pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2), wi
Builds PyTorch-native graph neural networks with TorchDrug for molecules and proteins, exposing custom GNN architectures, task/dataset abstractions, molecular generation, retrosynthesis planning, and knowledge-graph reasoning. Use when a project specifically needs TorchDrug's dat
Generates professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings — biomarker-stratified patient cohort analyses with outcomes and evidence-based treatment recommendation reports with decision algorithms, supporting GRADE evidence
Prepares ISO 13485 certification documentation for medical device Quality Management Systems (QMS) — gap analysis of existing documentation, Quality Manuals, required procedures and work instructions, and Medical Device Files. Use for ISO 13485 QMS documentation, conducting a doc
Processes and analyzes physiological biosignals with the NeuroKit2 Python toolkit — ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements, or when
Reads, writes, and manipulates DICOM (Digital Imaging and Communications in Medicine) medical imaging files with the pydicom Python library. Use when reading/writing/modifying DICOM data, extracting pixel data from CT, MRI, X-ray, or ultrasound images, anonymizing DICOM files, wo
Develops, tests, and validates clinical machine learning models with the PyHealth 2.x healthcare AI toolkit. Use when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, length of stay, drug recommendation), medical coding systems (ICD
Generates concise (3-4 page), focused medical treatment plans in LaTeX/PDF format across all clinical specialties — general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management — using SMART goal framew
Verifies that every bibliography entry actually exists by cross-checking Crossref, OpenAlex, Semantic Scholar, and arXiv (no API key required) plus doi.org DOI registration, fuzzy-matching title and authors (difflib ratio >= 0.70), flagging retractions recorded by Crossref (inclu
Runs a 13-agent deep research pipeline for rigorous academic work on any topic across 7 modes (full research, quick brief, paper review, lit-review, fact-check, Socratic guided research dialogue, and systematic review with optional meta-analysis), covering research-question formu
Audits and repairs Markdown link health across a skills repo via a four-tier pipeline (config hardening, intra-repo file-ref fixes, external URL substitutions, residual exclusions) and enforces a Tier 3 substitution guardrail that prevents regressions of previously-passing links;
Drafts and revises academic papers through a 12-agent pipeline with hardened LaTeX output (apa7 class, PDF compiled from LaTeX), supporting IMRaD, literature review, theoretical, case study, policy brief, and conference paper structures, APA 7.0 (default), Chicago, MLA, IEEE, and
Orchestrates the full academic research pipeline (research, write, integrity check, review, revise, re-review, re-revise, final integrity check, finalize), coordinating alterlab-deep-research, alterlab-paper-writer, and alterlab-paper-reviewer into a seamless 10-stage workflow wi
The AlterLab front door and multi-agent launcher — routes a task to the right AlterLab skill(s) when the user invokes the suite without naming one, and for a multi-stage goal (or on the keyword 'alterflow', aliases 'alterresearch' / 'ultralab') it clarifies the goal with a few qu
Designs courses and teaching materials using backward design (Wiggins & McTighe), constructive alignment (Biggs), and Bloom's taxonomy alignment, generating rubrics, formative and summative assessments, syllabi, lesson plans, inclusive-pedagogy guidance, and online/hybrid course
Supervises theses and dissertations end to end — structure guidance from proposal through defense, chapter-by-chapter writing support (introduction, literature review, methodology, results, discussion), supervision strategies, committee management, defense and viva voce preparati
Healthy nodes, a quiet network, 300 restarts in three days, and a latency budget measured in milliseconds
Discovery worked. Ping worked. Every TCP connection timed out, and later the tunnel only worked when someone had a terminal open.
Every VM came back. The cluster did not. Declarative systems converge on config, and the datapath isn't config.
A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.
A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.
None of the safety came from the model. It came from six boring habits.
Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.
Six hours in, one step left, everything green, and the incident that didn't happen
CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.
Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it
An API request routing a model's tool call through an approval gate to a remote MCP server
31 config keys, two audits, and why the first one was wrong in both directions
The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.
Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.
Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.
"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks
stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.
The most important rule wasn't about what I could change. It was about what I was allowed to display.
Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.
Use MCP Inspector to connect to local or remote servers, inspect capabilities, call tools, read resources, test prompts, and diagnose failures before release.
/observability
observability
Instrument services with structured logging, Prometheus metrics, and OpenTelemetry tracing. Build Grafana dashboards, write Prometheus alerting rules, run k6 load tests, and plan infrastructure capacity.
/opa
opa
Generate, test, validate, explain, and debug OPA (Open Policy Agent) Rego policies and Conftest configurations. Covers deny/warn/violation rules, unit tests, regal linting, conftest fmt, namespace design, input shape analysis, and GitHub Actions integration. Use when asked to "write a policy", "test a rego file", "validate policies", "explain this rego", or "why is my policy not firing".
/openshift
openshift
OpenShift SCC diagnosis and hardening, Route TLS patterns, OpenShift GitOps app delivery, and cluster upgrade validation.
/pr-review
pr-review
Comprehensive PR review across six dimensions — cost impact, environment drift, ownership gaps, SOC 2 compliance, deprecated API / version hygiene, and rollback feasibility. Each mode inspects the diff and current file state, reports findings with severity, and recommends concrete fixes. Use when preparing a PR for merge, conducting a pre-deployment readiness check, or performing a post-merge risk assessment.
/preflight
preflight
Production-readiness preflight check for a directory, repo, or single file. Auto-detects file types (Kubernetes manifests, Terraform, GitHub Actions workflows, Helm values/charts, Flux Kustomizations/HelmReleases, Dockerfiles, shell scripts) and applies type-specific checks across the whole scope. Returns a per-file summary table and aggregated verdict. Use before deploying, merging, or applying a folder of config. For PR diffs spanning multiple files use /platform-skills:pr-review instead. For deep Helm chart work use /platform-skills:helmchart instead.
/product
product
Apply product thinking to platform work — DevEx audits, friction analysis, RFC/ADR drafting, incident communication, post-mortems, capacity planning, cost optimisation, and platform health review.
/renovate
renovate
Generate renovate.json covering all dependency file types used in a repo, emit a GitHub Actions workflow that validates renovate.json on every PR, or generate a pre-commit hook for local validation.
/runtime-security
runtime-security
Detect and respond to in-container threats at the syscall level using Falco (eBPF-based, CNCF, open-source, no license cost). Covers Falco installation on EKS/GKE with eBPF driver, custom rule authoring, alert routing via Falcosidekick, rule debugging, and bridging Falco runtime signals to Kyverno admission enforcement. Use when asked to "detect privilege escalation in containers", "set up runtime threat detection", "write a Falco rule", "route Falco alerts to Slack", or "debug why my Falco rule is not firing".
/secrets
secrets
Secrets strategy, External Secrets Operator scaffolding, Sealed Secrets seal/rotate/backup, rotation runbooks, and Kubernetes-side secrets audit.
/self-improve
self-improve
Bootstrap and operate a self-improving agent workspace. Scaffolds .learnings/ and memory/ directories, captures errors and learnings during a session, detects recurring patterns, recalls verified lessons, and promotes stable entries to scoped rule files (.claude/rules/ or ~/.claude/rules/). Also implements the Proactive Agent pillars — WAL protocol, working buffer, SESSION-STATE, daily notes, VBR, VFM scoring, ADL decision logic, heartbeat, and reverse prompting. Use when asked to "remember this lesson", "set up agent memory", "log that error", "what did we learn about X", "promote learnings", "revoke that rule", "capture session state", or "enable proactive mode".
/setup-agents
setup-agents
Scaffold a multi-agent AI setup for any repo. Scans the codebase, interviews the developer, generates agent configs for whichever AI tools the repo uses (Copilot, Claude Code, Cursor, Codex, Windsurf). Use when asked to "set up agents", "scaffold Copilot agents", or "create an AGENTS.md".
/supply-chain
supply-chain
Secure the software supply chain from source to running container. Covers Cosign keyless image signing (Sigstore/Rekor), SBOM generation and attestation (Syft), vulnerability scanning with severity gates (Trivy/Grype), SLSA Level 2 provenance, and Kyverno/OPA admission enforcement. All open-source, no license cost. Use when asked to "sign my image", "generate an SBOM", "scan for CVEs", "attest build provenance", "enforce image signatures in Kubernetes", or "implement SLSA".
/terraform
terraform
Runs through the full Terraform validation pipeline — fmt, validate, tflint, security scan — and reviews a module or plan for blast radius, IAM risk, and state impact.
/triage
triage
Triages a PR comment — from a bot (Copilot, CI) or a human reviewer. Routes to the `triage_helper.py` helper for identity checks, thread snapshotting, isolated-worktree fixes, and publish/reply/resolve mechanics; you classify the finding and apply a justified fix. `--dry-run` is fully read-only (investigation and a printed plan, zero mutations). `--no-resolve` runs the full fix/reply workflow but never resolves a thread. Run from inside the repo.
/trivy
trivy
Scan container images, filesystems, git repos, and existing SBOMs for CVEs, secrets, and license violations using Trivy. Covers local CLI, CI severity gates with SARIF upload, and continuous monitoring via Trivy Operator (Flux HelmRelease). Use when asked to "scan my image", "check for CVEs", "scan this repo for secrets", "scan an SBOM", or "set up continuous cluster vulnerability monitoring". IaC misconfig → /platform-skills:checkov. Admission posture → /platform-skills:kyverno. Image signing/SBOM generation → /platform-skills:supply-chain.
/zizmor
zizmor
Audit GitHub Actions workflows, composite actions, Dependabot configs, and pre-commit configs for security findings using zizmor — template injection, credential persistence, unpinned uses, over-broad permissions, impostor commits. Covers local CLI, auto-fix, zizmor.yml policy, severity-based CI gates, SARIF upload, and pre-commit. Use when asked to "audit my workflows", "run zizmor", "is this workflow safe", "check for template injection", "pin my actions", or "set up a zizmor CI gate". Workflow syntax and shell errors → /platform-skills:github-actions (actionlint). IaC misconfig → /platform-skills:checkov. Image and dependency CVEs → /platform-skills:trivy. Keeping SHA pins fresh → /platform-skills:renovate.
/README
README
반복 작업을 `/이름` 으로 호출. 파일명 = 커맨드 이름(`fix-issue.md` → `/fix-issue`).
/fix-issue
fix-issue
이슈 #$ARGUMENTS 를 처리한다(이슈 우선 워크플로):
/knowledge-graph
Knowledge graph
AGENTS.md 생태계(rules·memory·agents·skills·commands·workflows)의 연결 구조를
/sdlc-cycle
sdlc-cycle
이슈/기획서 기준 SDLC 한 사이클(이슈→개발→테스트→검증→PR/MR)을 사람 개입 없이 자동 실행.
Your car as a chat-room agent: Raspberry Pi 5 + dashcam + local AI. CodeWatch's sibling for the garage.
23 views 0 likesThe enterprise gateway for autonomous agents. Identity management, per-channel isolation, credential vault, per-session tamper-evident audit log.
13 views 0 likesAI agent for Home Assistant — talk to your home, create automations in plain language, analyze cameras with face recognition, and get proactive anomaly alerts.…
13 views 0 likesA desktop app to prototype agent ideas, inspect every harness step, replay failures, and evaluate performance, all in one place. Local-first, cloud-ready for ma…
13 views 0 likesLocal-first AI memory you can see, edit, and override — portable across Claude Code, Codex, Cursor, Windsurf, and other MCP coding tools.
13 views 0 likesWeb & desktop (Electron) client for the OCTO open workplace — one React + TypeScript codebase shipping browser and PC surfaces, with first-class AI agent UX.
13 views 0 likes同花顺官方 A股金融数据服务,提供股票实时行情、历史行情、财务报表、指数、板块、涨停等数据,适用于 AI Agent、量化研究和应用开发,支持 API、MCP、CLI 和 Python。Official Tonghuashun (HiThink) A-share financial data service provi…
19 views 0 likesOpen-source desktop SQL workspace for PostgreSQL, MySQL/MariaDB, SQLite and 15+ more databases like DuckDB, ClickHouse, Redis and Firestore. Built-in MCP server…
12 views 0 likes🤖 Local-assist BOSS Zhipin CLI for AI agents — search, welfare filtering, shortlist, JSON-envelope output; low-risk & compliant by default.
15 views 0 likesThe local-first sidebar AI agent for ComfyUI — runs on your own Claude OR ChatGPT subscription (no API keys, no extra LLM costs). Drives your live graph: edits,…
13 views 0 likesPersistent memory for Claude Code — identity, context, and continuity across sessions
16 views 0 likes🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库,覆盖8大社会科学学科的实证研究。CoPaper.AI…
17 views 0 likesA curated list of plugins, skills, MCP servers, patch/profile layers, orchestrators & UIs for DeepSeek Harness (DSH). Visualization · PPT · Coding · Agents · Lo…
25 views 0 likesWorld Memory Protocol.
23 views 0 likesRun your own organization of agents.
26 views 0 likesThe most RAM efficient harness
26 views 0 likesAI-native, free, open-source alternative to Jira, Trello, ClickUp & Monday. Built for Scrum teams where humans and AI agents collaborate as equals — on the same…
13 views 0 likesFree open-source desktop app that scrapes JAV metadata and generates NFO + cover art for Jellyfin, Emby & Kodi. No Docker, no CLI — one-click install on Windows…
15 views 0 likesA cross-platform desktop app to manage Agent Skills in one place and sync them to multiple AI coding tools’ global skills directories — “Install once, sync ever…
13 views 0 likes天枢 (Tianshu) 是一个基于harness工程的终端编程智能体运行时(Tui X Gui),针对DeepSeek V4 做了前缀缓存工程优化(长会话实测稳态命中率 97–99%)和深度适配。它跳出了传统 AI 编程助手把大模型仅当成“工具”的局限,基于认知虚拟机 (CVM)、自感知层和信息素(Stigmergy…
11 views 0 likes