LLM Mart Basic

Run RNA velocity analysis with scVelo on single-cell RNA-seq data — estimate cell-state transitions from spliced/unspliced mRNA dynamics, infer trajectory direction, compute latent time, and identify driver genes. Use when adding directionality to trajectories or studying differe

Train deep generative models for single-cell omics with scvi-tools — probabilistic batch correction and integration (scVI), reference-mapping transfer learning (scArches), differential expression with uncertainty, and multimodal models (totalVI for CITE-seq, MultiVI for multiome)

Analyzes spatial transcriptomics with squidpy (1.8.x) on AnnData and SpatialData objects, routing platforms correctly: Visium spots use spatial_neighbors(coord_type='grid') and pair with deconvolution, while Xenium/MERFISH single-cell data use coord_type='generic'/Delaunay neighb

Store and query genomic variant data at scale with TileDB-VCF — ingest VCF/BCF into compressed TileDB arrays, add samples incrementally, run fast parallel region/sample queries, and export back to VCF. Use when managing population-genomics variant datasets that are too large for

Wraps RDKit in a high-level, pandas-friendly datamol interface with sensible defaults for everyday drug discovery — SMILES/SDF loading into DataFrames, molecule standardization, descriptors, fingerprints, Butina clustering, 3D conformer generation, scaffold analysis, and parallel

Runs molecular machine learning with DeepChem — diverse featurizers, pre-built MoleculeNet benchmark datasets, and pre-trained models (ChemBERTa, GROVER) for property prediction (ADMET, toxicity, solubility) via traditional ML or graph neural networks. Use when running end-to-end

Predicts protein-ligand binding poses with DiffDock diffusion-based molecular docking from PDB structures and SMILES, producing pose confidence scores for virtual screening and structure-based drug design. Use when docking ligands into a protein, generating binding poses, or scre

Computes mass-spectral similarity and identifies compounds for metabolomics with matchms — comparing mass spectra, scoring similarity (cosine, modified cosine), and searching spectral libraries to annotate unknowns. Use when matching MS/MS spectra, identifying metabolites, or lib

Applies medicinal-chemistry filters with the medchem library — drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, and molecular complexity metrics for compound prioritization and library cleanup. Use when filtering or triaging a compound library, flagging PA

Featurizes molecules for machine learning with molfeat — ECFP/MACCS/MAP4 fingerprints, RDKit and Mordred physicochemical descriptors, pharmacophore and shape descriptors, and pretrained embeddings (ChemBERTa, ChemGPT, CheMeleon) exposed as scikit-learn transformers that convert S

Queries the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biomedical relationships across genes, drugs, diseases, phenotypes, pathways, and biological processes. Use when exploring drug-disease or gene-disease links, building disease-centric knowledge subgraphs, or

Loads Therapeutics Data Commons (TDC, PyTDC) AI-ready drug-discovery datasets and benchmarks — ADME, toxicity, drug-target interaction (DTI), scaffold splits, and molecular oracles for therapeutic ML and pharmacological prediction. Use when fetching a standardized benchmark datas

Provides the RDKit cheminformatics toolkit for low-level, fine-grained molecular primitives — SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure/SMARTS search, 2D/3D coordinate generation, similarity, and reaction handling. Use when custom sanitization,

Drives the Rowan cloud quantum-chemistry platform via its Python API for computational chemistry — pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2), wi

Builds PyTorch-native graph neural networks with TorchDrug for molecules and proteins, exposing custom GNN architectures, task/dataset abstractions, molecular generation, retrosynthesis planning, and knowledge-graph reasoning. Use when a project specifically needs TorchDrug's dat

Generates professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings — biomarker-stratified patient cohort analyses with outcomes and evidence-based treatment recommendation reports with decision algorithms, supporting GRADE evidence

Prepares ISO 13485 certification documentation for medical device Quality Management Systems (QMS) — gap analysis of existing documentation, Quality Manuals, required procedures and work instructions, and Medical Device Files. Use for ISO 13485 QMS documentation, conducting a doc

Processes and analyzes physiological biosignals with the NeuroKit2 Python toolkit — ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements, or when

Reads, writes, and manipulates DICOM (Digital Imaging and Communications in Medicine) medical imaging files with the pydicom Python library. Use when reading/writing/modifying DICOM data, extracting pixel data from CT, MRI, X-ray, or ultrasound images, anonymizing DICOM files, wo

Develops, tests, and validates clinical machine learning models with the PyHealth 2.x healthcare AI toolkit. Use when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, length of stay, drug recommendation), medical coding systems (ICD

Healthy nodes, a quiet network, 300 restarts in three days, and a latency budget measured in milliseconds

Discovery worked. Ping worked. Every TCP connection timed out, and later the tunnel only worked when someone had a terminal open.

Every VM came back. The cluster did not. Declarative systems converge on config, and the datapath isn't config.

A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.

A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.

None of the safety came from the model. It came from six boring habits.

Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.

Six hours in, one step left, everything green, and the incident that didn't happen

CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.

Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it

An API request routing a model's tool call through an approval gate to a remote MCP server

31 config keys, two audits, and why the first one was wrong in both directions

The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.

Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.

Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.

"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks

stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.

The most important rule wasn't about what I could change. It was about what I was allowed to display.

Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.

Use MCP Inspector to connect to local or remote servers, inspect capabilities, call tools, read resources, test prompts, and diagnose failures before release.

Analyze git diffs or staged changes and generate conventional commit messages that explain WHY a change was made. Supports auto-detecting type and scope, intelligent file staging, and interactive overrides. Use when asked to "write a commit message", "generate a commit", "describe my changes", "commit this", "summarize my diff", or "/commit".

SOC 2 compliance for Terraform — gap analysis, control implementation, evidence collection, and remediation guidance mapped to SOC 2 Trust Services Criteria.

Generate, review, secure, and test composite GitHub Actions following best practices — full repo scaffold, interview-driven generation, PR creation on existing repos, SHA pinning, secrets-as-inputs, job summaries, and actionlint validation.

Set up and troubleshoot Datadog — Agent deployment on Kubernetes, APM instrumentation, Log Management, Monitors, Dashboards, SLOs, Synthetic tests, and live incident investigation using the Datadog MCP server. Covers Terraform-managed Datadog resources.

Structured platform troubleshooting — classifies the problem layer, collects evidence, forms a root-cause hypothesis, and proposes a fix with validation and rollback steps.

Generate, format, and validate code documentation — docstrings, JSDoc, OpenAPI/Swagger specs, documentation sites, and developer guides.

Measure, benchmark, instrument, and debug DORA metrics (Deployment Frequency, Lead Time for Changes, Change Failure Rate, MTTR) for production engineering teams. Covers GitHub Actions instrumentation, Prometheus recording rules, Grafana dashboards, incident source integration, SaaS tool selection, and anti-pattern detection. Use when asked to "instrument DORA metrics", "benchmark our deployment frequency", "why is my MTTR data missing", or "generate a DORA dashboard".

Deploy and configure Dynatrace — OneAgent Kubernetes Operator, code-level instrumentation, Log Monitoring, custom metrics, SLOs, Dashboards, anomaly detection, Davis AI, and live incident investigation using the Dynatrace MCP server. Covers Terraform-managed Dynatrace resources.

FluxCD entry point — routes to the right workflow based on what you need. Live cluster issue → structured 5-workflow debug trace. Repo health check → 6-phase audit (discovery, validation, API compliance, best practices, security). Helm chart review → helmchart. Starts by asking one question to confirm the right mode.

Design, review, secure, and debug GitHub Actions workflows — reusable workflows, OIDC federation, SHA pinning, token scoping, promotion orchestration, and CI failure diagnosis.

Flux CD and Argo CD — two modes. debug: five structured debug workflows for live clusters (installation, source, HelmRelease, Kustomization, ResourceSet) producing a five-section report. audit: six-phase read-only repo analysis (discovery, validation, API compliance, best practices, security) producing a prioritised Critical/Warning/Info report.

Scaffold, lint, review, security-audit, test, and upgrade-verify Helm charts. Runs an interactive interview to build production-ready charts from scratch. Covers chart structure, values design, schema validation, kubeconform, helm diff, and multi-environment scaffolding. Use when asked to "create a helm chart", "lint my chart", "review my helm chart", "check helm security", "generate values schema", "run helm diff", or "add helm tests".

Design, install, debug, review, plan capacity, audit scaling history, migrate from Cluster Autoscaler, and upgrade Karpenter v1.x on EKS. Covers NodePool, EC2NodeClass, NodeClaim, Spot diversity, disruption strategy, Pod Identity/IRSA, interruption queue, private clusters, AMI rotation, and GitOps integration. Use when asked to "set up Karpenter", "debug why nodes aren't provisioning", "review my NodePool", "what would Karpenter provision for this workload", "why did this node terminate", "migrate from CA", or "upgrade Karpenter".

Design, debug, and review KEDA ScaledObject/ScaledJob autoscaling. Covers all major scalers (Prometheus, SQS, Kafka, Redis, Cron, HTTP Add-on, Azure Service Bus), TriggerAuthentication, scaling lifecycle tuning, GitOps integration, and troubleshooting. Use when asked to "add KEDA autoscaling", "debug why my ScaledObject isn't scaling", "review my KEDA config", or "generate a ScaledObject for <trigger>".

Find, live-validate, map the blast radius of, and revoke leaked secrets with Kingfisher (MongoDB) — across a local repo, Git history, a GitHub/GitLab/Bitbucket org, S3/GCS, Docker images, Slack, Jira, Confluence, Teams, or Postman. Covers local CLI scanning, direct validate/revoke without a scan, baseline management (track only new secrets), kingfisher.yaml policy, CI diff-scan gates, and pre-commit/Husky hooks. Use when asked to "scan for secrets", "is this key still live", "what can this credential reach", "revoke this token", "did we leak a secret", or "block new secrets in CI". Pattern-only secret scan bundled with a CVE pass → /platform-skills:trivy. Secrets-context safety in workflow YAML → /platform-skills:zizmor. Storing/rotating secrets inside the cluster → /platform-skills:secrets.

Cluster baseline scaffolding, RBAC diagnosis and generation, workload hardening, and structured pod/scheduling debug for plain Kubernetes across all distributions.

Generate, test, audit, debug, and migrate Kyverno policies using the new CEL-based policy types (ValidatingPolicy, MutatingPolicy, GeneratingPolicy, ImageValidatingPolicy — all apiVersion policies.kyverno.io/v1). Covers matchConstraints, matchConditions, CEL validations/mutations, generator.Apply(), Audit→Deny promotion, PolicyException, kyverno-cli testing, and migration from legacy ClusterPolicy or PodSecurityPolicy. Use when asked to "write a Kyverno policy", "test a ValidatingPolicy", "audit my cluster for violations", "why is my policy not firing", or "migrate from ClusterPolicy".

Linkerd-specific diagnostics — mTLS verification, proxy injection issues, authorization policy debugging, traffic management, and multi-cluster connectivity problems.

Linux administration and networking diagnostics — DNS, load balancing, VPCs, kernel tuning, and connectivity troubleshooting.

MCP server and client development — scaffold, implement tools/resources/prompts, validate schemas, debug protocol compliance, and deploy with auth and rate limiting.

Your car as a chat-room agent: Raspberry Pi 5 + dashcam + local AI. CodeWatch's sibling for the garage.

The enterprise gateway for autonomous agents. Identity management, per-channel isolation, credential vault, per-session tamper-evident audit log.

AI agent for Home Assistant — talk to your home, create automations in plain language, analyze cameras with face recognition, and get proactive anomaly alerts.…

A desktop app to prototype agent ideas, inspect every harness step, replay failures, and evaluate performance, all in one place. Local-first, cloud-ready for ma…

Local-first AI memory you can see, edit, and override — portable across Claude Code, Codex, Cursor, Windsurf, and other MCP coding tools.

Web & desktop (Electron) client for the OCTO open workplace — one React + TypeScript codebase shipping browser and PC surfaces, with first-class AI agent UX.

同花顺官方 A股金融数据服务，提供股票实时行情、历史行情、财务报表、指数、板块、涨停等数据，适用于 AI Agent、量化研究和应用开发，支持 API、MCP、CLI 和 Python。Official Tonghuashun (HiThink) A-share financial data service provi…

Open-source desktop SQL workspace for PostgreSQL, MySQL/MariaDB, SQLite and 15+ more databases like DuckDB, ClickHouse, Redis and Firestore. Built-in MCP server…

🤖 Local-assist BOSS Zhipin CLI for AI agents — search, welfare filtering, shortlist, JSON-envelope output; low-risk & compliant by default.

The local-first sidebar AI agent for ComfyUI — runs on your own Claude OR ChatGPT subscription (no API keys, no extra LLM costs). Drives your live graph: edits,…

Persistent memory for Claude Code — identity, context, and continuity across sessions

🔬 A curated collection of 23,000+ agent skills for empirical research across 8 social science disciplines. | 精选 23,000+ AI Agent 技能库，覆盖8大社会科学学科的实证研究。CoPaper.AI…

A curated list of plugins, skills, MCP servers, patch/profile layers, orchestrators & UIs for DeepSeek Harness (DSH). Visualization · PPT · Coding · Agents · Lo…

World Memory Protocol.

Run your own organization of agents.

The most RAM efficient harness

AI-native, free, open-source alternative to Jira, Trello, ClickUp & Monday. Built for Scrum teams where humans and AI agents collaborate as equals — on the same…

Free open-source desktop app that scrapes JAV metadata and generates NFO + cover art for Jellyfin, Emby & Kodi. No Docker, no CLI — one-click install on Windows…

A cross-platform desktop app to manage Agent Skills in one place and sync them to multiple AI coding tools’ global skills directories — “Install once, sync ever…

天枢 (Tianshu) 是一个基于harness工程的终端编程智能体运行时（Tui X Gui），针对DeepSeek V4 做了前缀缓存工程优化（长会话实测稳态命中率 97–99%）和深度适配。它跳出了传统 AI 编程助手把大模型仅当成“工具”的局限，基于认知虚拟机 (CVM)、自感知层和信息素（Stigmergy…