LLM Mart Basic

Build comprehensive DNA methylation maps by aggregating WGBS (Whole Genome Bisulfite Sequencing) data across multiple ENCODE experiments, donors, and labs. Use when the user wants to answer "where is DNA methylated/unmethylated in my tissue?" by combining per-CpG methylation data

Guide for de novo and known motif enrichment analysis of ENCODE ChIP-seq and ATAC-seq peaks using HOMER and MEME Suite. Use when users need to discover TF binding motifs in peaks, validate ChIP-seq targets, or find co-binding partners. Trigger on: motif analysis, HOMER, MEME, de

Integrate multiple ENCODE data types (RNA-seq, ATAC-seq, Histone ChIP-seq, TF ChIP-seq) for a tissue/cell type to build a comprehensive regulatory landscape. Use when the user wants to answer "what are the enhancers, promoters, and regulatory elements active in my tissue, and whi

Guide for annotating ENCODE peaks with genomic features using ChIPseeker and GREAT. Use when users need to assign peaks to genes, determine genomic feature distribution (promoter, intron, intergenic), or perform gene ontology enrichment of peak-associated genes. Trigger on: peak

Execute ENCODE ATAC-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Handles Tn5 transposase offset correction, mitochondrial read removal, and nucleosom

Execute ENCODE ChIP-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Use when users need to process ChIP-seq data following ENCODE standards, run peak ca

Execute CUT&RUN processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing CUT&RUN or CUT&Tag data, an alternative to ChIP-seq with lower background. Trigger on: CUT&RUN pip

Execute ENCODE DNase-seq pipeline from FASTQ to hotspots and footprints. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing DNase-seq data, calling DNase hypersensitive sites, performing footprinting analysis. Trigger on: DN

Execute ENCODE Hi-C pipeline from FASTQ to contact matrices and loop calls. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing Hi-C data, generating contact matrices, or calling loops. Trigger on: Hi-C pipeline, chromatin co

Execute ENCODE RNA-seq pipeline from FASTQ to gene quantification and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing RNA-seq data with STAR alignment, RSEM/Kallisto quantification, or generating expression

Execute ENCODE Whole Genome Bisulfite Sequencing (WGBS) pipeline from FASTQ to methylation calls. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing WGBS/bisulfite-seq data, calling methylation levels, generating bedMethyl f

Assess the scientific integrity and trustworthiness of publications before relying on their findings. Use this skill whenever evaluating a paper for a workflow, citing a study, building an analysis on published methods, or when a user asks about the reliability of a study. Checks

Evaluate ENCODE experiment quality using standard metrics and audit flags. Use when the user asks about data quality, wants to filter for high-quality experiments, needs to interpret quality metrics (FRiP, NSC, RSC, NRF, IDR, TSS enrichment, fragment size), wants to understand EN

Discover and characterize regulatory elements (enhancers, promoters, silencers, insulators, super-enhancers) using ENCODE data and the cCRE catalog. Use when the user wants to find candidate regulatory elements, identify active enhancers in a tissue, map promoter states, classify

Generate publication-ready methods sections, figure legends, supplementary tables, and data availability statements from ENCODE analysis provenance. Implements the scientific documentation standards requiring complete metadata reporting. Use when the user needs to write methods,

Conduct rigorous cross-study meta-analysis of scRNA-seq data from ENCODE, integrating multiple single-cell transcriptomic datasets for a tissue/cell type. Use when the user wants to answer "what cell types exist in my tissue and what genes define them?" by combining scRNA-seq dat

Search and explore ENCODE Project genomics data. Use when the user wants to find experiments, files, or explore what data is available for specific assays, organs, cell lines, or targets.

Set up the ENCODE Toolkit server connection. Use when the user needs help installing, configuring, or troubleshooting the ENCODE connector.

Find and work with ENCODE single-cell genomics data including scRNA-seq and scATAC-seq. Use when the user asks about single-cell experiments, cell type resolution, clustering from ENCODE data, deconvolution of bulk signals using single-cell references, or comparing single-cell vs

Track ENCODE experiments locally with publications, citations, and provenance. Use when the user wants to build a collection of experiments, manage citations, compare experiments, or track data provenance.

Discovery worked. Ping worked. Every TCP connection timed out, and later the tunnel only worked when someone had a terminal open.

Every VM came back. The cluster did not. Declarative systems converge on config, and the datapath isn't config.

A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.

A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.

None of the safety came from the model. It came from six boring habits.

Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.

Six hours in, one step left, everything green, and the incident that didn't happen

CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.

Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it

An API request routing a model's tool call through an approval gate to a remote MCP server

31 config keys, two audits, and why the first one was wrong in both directions

The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.

Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.

Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.

"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks

stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.

The most important rule wasn't about what I could change. It was about what I was allowed to display.

Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.

Use MCP Inspector to connect to local or remote servers, inspect capabilities, call tools, read resources, test prompts, and diagnose failures before release.

Build an MCP server in TypeScript with focused tools, validated schemas, local and remote transports, Inspector tests, and production security controls.

Instrument services with structured logging, Prometheus metrics, and OpenTelemetry tracing. Build Grafana dashboards, write Prometheus alerting rules, run k6 load tests, and plan infrastructure capacity.

Generate, test, validate, explain, and debug OPA (Open Policy Agent) Rego policies and Conftest configurations. Covers deny/warn/violation rules, unit tests, regal linting, conftest fmt, namespace design, input shape analysis, and GitHub Actions integration. Use when asked to "write a policy", "test a rego file", "validate policies", "explain this rego", or "why is my policy not firing".

OpenShift SCC diagnosis and hardening, Route TLS patterns, OpenShift GitOps app delivery, and cluster upgrade validation.

Comprehensive PR review across six dimensions — cost impact, environment drift, ownership gaps, SOC 2 compliance, deprecated API / version hygiene, and rollback feasibility. Each mode inspects the diff and current file state, reports findings with severity, and recommends concrete fixes. Use when preparing a PR for merge, conducting a pre-deployment readiness check, or performing a post-merge risk assessment.

Production-readiness preflight check for a directory, repo, or single file. Auto-detects file types (Kubernetes manifests, Terraform, GitHub Actions workflows, Helm values/charts, Flux Kustomizations/HelmReleases, Dockerfiles, shell scripts) and applies type-specific checks across the whole scope. Returns a per-file summary table and aggregated verdict. Use before deploying, merging, or applying a folder of config. For PR diffs spanning multiple files use /platform-skills:pr-review instead. For deep Helm chart work use /platform-skills:helmchart instead.

Apply product thinking to platform work — DevEx audits, friction analysis, RFC/ADR drafting, incident communication, post-mortems, capacity planning, cost optimisation, and platform health review.

Generate renovate.json covering all dependency file types used in a repo, emit a GitHub Actions workflow that validates renovate.json on every PR, or generate a pre-commit hook for local validation.

Detect and respond to in-container threats at the syscall level using Falco (eBPF-based, CNCF, open-source, no license cost). Covers Falco installation on EKS/GKE with eBPF driver, custom rule authoring, alert routing via Falcosidekick, rule debugging, and bridging Falco runtime signals to Kyverno admission enforcement. Use when asked to "detect privilege escalation in containers", "set up runtime threat detection", "write a Falco rule", "route Falco alerts to Slack", or "debug why my Falco rule is not firing".

Secrets strategy, External Secrets Operator scaffolding, Sealed Secrets seal/rotate/backup, rotation runbooks, and Kubernetes-side secrets audit.

Bootstrap and operate a self-improving agent workspace. Scaffolds .learnings/ and memory/ directories, captures errors and learnings during a session, detects recurring patterns, and promotes stable entries to project memory (CLAUDE.md, AGENTS.md, or references/). Also implements the Proactive Agent pillars — WAL protocol, working buffer, SESSION-STATE, daily notes, VBR, VFM scoring, ADL decision logic, heartbeat, and reverse prompting. Use when asked to "remember this lesson", "set up agent memory", "log that error", "promote learnings", "capture session state", or "enable proactive mode".

Scaffold a multi-agent AI setup for any repo. Scans the codebase, interviews the developer, generates agent configs for whichever AI tools the repo uses (Copilot, Claude Code, Cursor, Codex, Windsurf). Use when asked to "set up agents", "scaffold Copilot agents", or "create an AGENTS.md".

Secure the software supply chain from source to running container. Covers Cosign keyless image signing (Sigstore/Rekor), SBOM generation and attestation (Syft), vulnerability scanning with severity gates (Trivy/Grype), SLSA Level 2 provenance, and Kyverno/OPA admission enforcement. All open-source, no license cost. Use when asked to "sign my image", "generate an SBOM", "scan for CVEs", "attest build provenance", "enforce image signatures in Kubernetes", or "implement SLSA".

Runs through the full Terraform validation pipeline — fmt, validate, tflint, security scan — and reviews a module or plan for blast radius, IAM risk, and state impact.

Triages a PR comment — from a bot (Copilot, CI) or a human reviewer. Fetches the comment and diff via gh CLI, classifies it, applies the fix directly to the file if valid, posts a reply on the thread, and resolves it. Run from inside the repo.

Scan container images, filesystems, git repos, and existing SBOMs for CVEs, secrets, and license violations using Trivy. Covers local CLI, CI severity gates with SARIF upload, and continuous monitoring via Trivy Operator (Flux HelmRelease). Use when asked to "scan my image", "check for CVEs", "scan this repo for secrets", "scan an SBOM", or "set up continuous cluster vulnerability monitoring". IaC misconfig → /platform-skills:checkov. Admission posture → /platform-skills:kyverno. Image signing/SBOM generation → /platform-skills:supply-chain.

Audit GitHub Actions workflows, composite actions, Dependabot configs, and pre-commit configs for security findings using zizmor — template injection, credential persistence, unpinned uses, over-broad permissions, impostor commits. Covers local CLI, auto-fix, zizmor.yml policy, severity-based CI gates, SARIF upload, and pre-commit. Use when asked to "audit my workflows", "run zizmor", "is this workflow safe", "check for template injection", "pin my actions", or "set up a zizmor CI gate". Workflow syntax and shell errors → /platform-skills:github-actions (actionlint). IaC misconfig → /platform-skills:checkov. Image and dependency CVEs → /platform-skills:trivy. Keeping SHA pins fresh → /platform-skills:renovate.

반복 작업을 `/이름` 으로 호출. 파일명 = 커맨드 이름(`fix-issue.md` → `/fix-issue`).

이슈 #$ARGUMENTS 를 처리한다(이슈 우선 워크플로):

AGENTS.md 생태계(rules·memory·agents·skills·commands·workflows)의 연결 구조를

이슈/기획서 기준 SDLC 한 사이클(이슈→개발→테스트→검증→PR/MR)을 사람 개입 없이 자동 실행.

MCP server for reusable prompt templates, multi-step workflow chains, and quality gates. Compose agentic workflows with an operator syntax; export as native ski…

中国股票数据基础设施，覆盖行情、研报、资金面、筹码、公告、龙虎榜、ETF/期权、舆情互动、基本面、行业板块、宏观与风险事件等核心数据。42+A股数据集，日更、自托管、MCP 原生，零注册、零 API Token

OKF (Open Knowledge Format): Durable, structured memory for AI agents. Author, validate, consume, and maintain portable knowledge bundles through an ecosystem o…

토스증권을 AI 에이전트와 터미널에서 다루는 도구. CLI 와 MCP 서버로 계좌·시세·주문은 물론 웹앱 전용 기능(수급·AI 시그널·스크리너·배당)까지, JSON·CSV 구조화 출력으로 AI 도구·자동화에 바로 연동.

Claude skills for LinkedIn. 11 Claude Code and Codex skills that write human-sounding LinkedIn posts, craft comments that get noticed, analyze your feed, and bu…

MCP server connecting AI agents to ITASCA engines (PFC, FLAC, 3DEC, MPoint, MassFlow) — run geotechnical & geomechanics simulations through natural conversation

A curated list of amazingly awesome articles, people, applications, software libraries and projects related to the knowledge management space

One local dashboard for every Claude Code, Codex, Cursor, Antigravity, and Kilo Code session on your Mac. Spawn in parallel, ship in parallel. Open source, MIT.

Building blocks for frontier OpenAI agents in Rust. Nanocodex empowers you with Codex-level performance anywhere.

The AI agent that lives in your framework/browser

Self-Programming AI Assistant. Capture, automate, and refine all your workflows.

Consider it done. The open-source AI agent that works out of the box · 想到，就能做到。开源、开箱即用的 AI Agent。

Make Any Website into CLI & Use your logged-in browser by AI agent.

ISO 24495 Plain Language skills and Claude Code plugin

Deterministic, fail-open tool routing for Hermes Agent with an optional local-model fallback.

1인 사업가 생산성 키트 — 직원 없이 49개를 자동화했고, 그중 바로 쓸 수 있는 AI 에이전트 스킬 26개(+실행 스크립트)를 공개합니다

AI Agents & MCPs & AI Workflow Automation • (~400 MCP servers for AI agents) • AI Automation / AI Agent with MCPs • AI Workflows & AI Agents • MCPs for AI Agent…

The open-source, self-hosted video conferencing software. Scalable, customizable, and with a powerful AI Meeting Agent.

Business operating system for Claude Code — 57 skills, 21 agents, smart daemon. Unified inbox (WhatsApp/Email/Slack/Telegram), autonomous PR merge, full-AWS mon…

A local-first, cross-platform Electron desktop workspace for Pi Coding Agent, with sessions, project files, browser tools, skills, plugins, and messaging integr…