LLM Mart Basic

Review a diff with the reviewer fleet, funneled to one triaged verdict. Targets the current working diff, a path, or an inbound GitHub PR.

Exploratory spike on a throwaway branch — answer a named question with disposable code. Never merges; exits to a findings note or $ca-feature.

Autonomous sprint — one interactive spec gate, then plan-to-PR execution with every auto-decision SMARTS-scored and logged. Hard gates remain true stops.

Daily repo hygiene — review the day's repo state, then perform the cleanups under per-action confirmation. Fast-forward only, never destructive without a yes.

Show the project's current state at a glance — stage, open tasks, open questions, overrides since the last checkpoint, current branch. Read-only.

The sanctioned task-board mutator — add a queued task, start one (flips to in-progress and stamps the date, minting a dotted ID on pick-up), or mark an in-progress task done. The only blessed write to open-tasks.md.

Opt-in lightweight STRIDE pass for a sensitive feature before implementation. Not a routine gate — invoke it when a change warrants security thought.

Deep, rarely-convened whole-codebase audit — eleven specialist lenses, a resumable on-disk audit log, findings filed as GitHub issues on approval. Expensive; estimates cost and STOPs before running. Never a required gate.

Watch a PR's CI to completion — diagnose on red, notify and offer the merge on green. Never auto-merges.

The Socratic spec-refinement front of /feature, and the planning front of /sprint. Routed to BEFORE any code — it takes a one-line idea and drives it to an approved, concrete spec with testable acceptance criteria. Five gated phases — frame, shape, refine, write, review-and-appro

The only path to a commit. Routed to when the user invokes /commit or otherwise instructs codeArbiter to persist staged changes. Nine gated phases — permission, branch, classification, verification (test/lint/secrets), behavioral proof, diff review, selective stage, message, comm

Optional manual drift audit — report stale provenance-tracked docs (via _provenancelib drift detection across .codearbiter/.provenance/), then per stale doc offer re-scout / re-baseline / defer. Not the daily loop; commit-gate auto-heal owns routine maintenance.

The brownfield back-fill. Routed to by /create-context, and by startup when .codearbiter/CONTEXT.md lacks the <!--INITIALIZED--> body marker but source code exists. Six gated phases — pre-flight, scout dispatch, synthesis, gap interview, write, lock. Reads the existing codebase t

The banned-primitive gate. Routed to when changed code hashes, signs, encrypts, derives keys, generates security-relevant randomness, configures TLS, or imports a crypto library. Rejects broken primitives, disabled TLS verification, and home-rolled crypto; the approved-primitive

Investigate-then-decide root-cause analysis for a defect whose cause is unknown (distinct from /fix, which assumes a known bug). Five gated phases: capture, hypothesize, gather, decide, hand off. Investigation only, no code changes; exits to /fix, /adr, or a no-action close.

Author and track Architecture Decision Records. Routed to when the user invokes /adr to record a new decision or /adr-status to list ADR health. Authors numbered, dated, user-attributed ADRs under .codearbiter/decisions/, maintains supersede chains, and reports status read-only.

Reconcile the project's architectural artifacts against the scaffold and prior decisions, then present each variance as a SMARTS analysis for the user to decide. Routed to when the user asks to arbitrate, reconcile, or consolidate architectural context, requests a variance report

The greenfield decomposition interview. Routed to at startup when .codearbiter/CONTEXT.md lacks the <!--INITIALIZED--> body marker and no source code exists, or when the user invokes /decompose. A senior-architect persona drives a six-layer interview, persists every layer to disk

The parallel fan-out primitive. Routed to by any skill or command that splits work across independent units and dispatches an agent per unit — subagent-driven-development, /sprint, parallel /review. It owns the dispatch/collect/funnel discipline: bound concurrency, isolate units,

The checkpoint coordinator for /feature. Routed to by /feature once a writing-plans plan exists. Groups tasks into batches, delegates each batch to subagent-driven-development (fresh author agent per task, full review chain, fresh verification), then stops for a human checkpoint

Fourteen posts of being wrong in production, compressed to checkboxes

Healthy nodes, a quiet network, 300 restarts in three days, and a latency budget measured in milliseconds

Discovery worked. Ping worked. Every TCP connection timed out, and later the tunnel only worked when someone had a terminal open.

Every VM came back. The cluster did not. Declarative systems converge on config, and the datapath isn't config.

A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.

A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.

None of the safety came from the model. It came from six boring habits.

Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.

Six hours in, one step left, everything green, and the incident that didn't happen

CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.

Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it

An API request routing a model's tool call through an approval gate to a remote MCP server

31 config keys, two audits, and why the first one was wrong in both directions

The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.

Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.

Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.

"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks

stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.

The most important rule wasn't about what I could change. It was about what I was allowed to display.

Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.

List, search, and inspect ENCODE files by format, type, and assembly

Generate ENCODE citations for publications, grants, and presentations

Check if two ENCODE experiments are compatible for combined analysis

Cross-reference ENCODE data with PubMed, GEO, ClinicalTrials, and bioRxiv

Download ENCODE files (BED, FASTQ, BAM, bigWig) with MD5 verification

Log derived files and trace provenance back to ENCODE source data

Store, check, or clear ENCODE API credentials for restricted data

Assess ENCODE experiment quality using audit counts and replicate counts

Search ENCODE experiments by assay, organ, biosample, or target

Track ENCODE experiments locally with publications and provenance

List, search, and inspect ENCODE files by format, type, and assembly

Generate ENCODE citations for publications, grants, and presentations

Check if two ENCODE experiments are compatible for combined analysis

Cross-reference ENCODE data with PubMed, GEO, ClinicalTrials, and bioRxiv

Download ENCODE files (BED, FASTQ, BAM, bigWig) with MD5 verification

Log derived files and trace provenance back to ENCODE source data

Store, check, or clear ENCODE API credentials for restricted data

Assess ENCODE experiment quality using audit counts and replicate counts

Search ENCODE experiments by assay, organ, biosample, or target

Track ENCODE experiments locally with publications and provenance

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