LLM Mart Basic

The Checkpoint Harmony Email (Avanan) whitelist and blacklist surface: the match fields and matching modes an exception accepts, the defaults that widen an entry beyond what was typed, the id mismatch between listing and editing, and the standing security consequence of a detecti

Discover and compare Jev and TypeSafe SDKs, integrations, applications, and evaluations. Use when selecting public resources for a typed-decision workflow or checking what evidence exists for a Jev claim.

Flint · local-skills-hub — a local-first personal AI skills asset manager. Centralize, tag, deduplicate skills, and deploy them into agent and project directori…

Inspect PDF, Microsoft Office (docx/xlsx/pptx and legacy doc/xls/ppt), and Apple iWork (key/numbers/pages) files without opening or rendering them. Use for page and slide and sheet counts, title/author/created metadata, encryption and macro and digital-signature and JavaScript ri

A coding agent harness built specifically for Motif-3

Build comprehensive chromatin accessibility maps by aggregating ATAC-seq and DNase-seq narrowPeak data across multiple ENCODE experiments, donors, and labs. Use when the user wants to answer "where is chromatin accessible in my tissue?" by combining peak calls into a union peak s

Guide for multi-experiment batch operations: QC screening, batch download, comparison, and report generation across many ENCODE experiments simultaneously. Use when users need to process 5+ experiments together, create experiment comparison tables, perform batch quality checks, o

Install bioinformatics tools for ENCODE data analysis. Covers CLI tools (BWA, STAR, samtools, MACS2), R/Bioconductor packages (DESeq2, Seurat, ChIPseeker), Python packages (Scanpy, deeptools), and Nextflow pipeline infrastructure. Generates conda environments, R install scripts,

Guide for integrating CellxGene Census single-cell data with ENCODE bulk experiments. Use when users need cell-type-specific expression context for ENCODE regulatory data, want to deconvolve bulk ENCODE signals, or validate regulatory elements at single-cell resolution. Trigger o

Generate proper ENCODE citations for publications, grants, and presentations. Use when the user needs to cite ENCODE data, create bibliography entries, write acknowledgment sections, or ensure compliance with ENCODE data use policy.

Guide for annotating ENCODE regulatory variants with ClinVar clinical significance. Use when users need to check if variants in ENCODE peaks have clinical associations, find pathogenic variants in regulatory regions, or assess variant clinical impact. Trigger on: ClinVar, clinica

Compare ENCODE experiments across different biosamples, tissues, or cell lines to identify tissue-specific regulatory patterns. Use when the user wants cross-tissue comparison, cell-type comparison, tissue-specific elements, differential chromatin, biosample matching, disease vs

Cross-reference ENCODE data with PubMed, bioRxiv, ClinicalTrials.gov, Open Targets, GTEx, ClinVar, GWAS Catalog, gnomAD, Ensembl, and other scientific databases. Use when the user wants to find publications, preprints, or clinical trials related to ENCODE experiments, chain ENCOD

Use ENCODE functional genomics data for disease mechanism research. Use when the user wants to connect GWAS variants to regulatory elements, annotate disease-associated loci with functional data, identify therapeutic targets from epigenomic data, build disease regulatory models,

Download ENCODE genomics files (BED, FASTQ, BAM, bigWig, etc.) to the user's machine. Use when the user wants to download data files from ENCODE experiments.

Query the Ensembl REST API for regulatory feature annotations, variant effect prediction (VEP), coordinate liftover, gene lookups, and cross-references. Use when the user needs to annotate variants with VEP (consequence, CADD, REVEL, SpliceAI), check Ensembl Regulatory Build over

Build comprehensive epigenomic profiles for tissues or cell types using ENCODE data. Use when the user wants to characterize chromatin states, assemble histone modification panels, create epigenomic landscapes, run ChromHMM segmentation, identify super-enhancers or bivalent domai

Analyze ENCODE functional genomics screens including CRISPR screens, MPRA (Massively Parallel Reporter Assays), and STARR-seq. Find screen data in ENCODE, process results, identify functional elements, and integrate with epigenomic annotations.

Search, query, and cross-reference NCBI GEO (Gene Expression Omnibus) datasets with ENCODE experiments. Use when the user wants to find GEO accessions for ENCODE experiments, search GEO for complementary datasets, download GEO metadata or series matrices, cross-reference ENCODE a

Query gnomAD (Genome Aggregation Database) for population allele frequencies, gene constraint scores, and variant annotations to interpret ENCODE regulatory variants. Use when the user needs allele frequencies for variants in ENCODE regulatory elements, wants to assess gene const

Every VM came back. The cluster did not. Declarative systems converge on config, and the datapath isn't config.

A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.

A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.

None of the safety came from the model. It came from six boring habits.

Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.

Six hours in, one step left, everything green, and the incident that didn't happen

CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.

Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it

An API request routing a model's tool call through an approval gate to a remote MCP server

31 config keys, two audits, and why the first one was wrong in both directions

The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.

Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.

Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.

"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks

stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.

The most important rule wasn't about what I could change. It was about what I was allowed to display.

Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.

Use MCP Inspector to connect to local or remote servers, inspect capabilities, call tools, read resources, test prompts, and diagnose failures before release.

Build an MCP server in TypeScript with focused tools, validated schemas, local and remote transports, Inspector tests, and production security controls.

An MCP server exposes tools, resources, or prompts through a standard protocol so an AI application can discover and use external capabilities.

`crabbox attach` follows the recorded events of an active coordinator run and

`crabbox azure` groups Azure provider setup commands. It currently has a single

`crabbox bench` records and reports local benchmark timing observations. It is a

`crabbox cache` inspects, purges, or warms package and build caches on a

`crabbox capsule` captures, replays, and tracks lightweight failure capsules.

Save the state of a lease, then restore it onto another box or fork it into a

`crabbox claims list` prints the lease claims stored on the current machine. It

`crabbox cleanup` sweeps direct-provider machines and local provider state that

`crabbox code` bridges a Linux lease's `code-server` workspace into the

`crabbox config` inspects and updates user configuration. It has three

`crabbox connect` resolves a lease and opens an interactive SSH session to it.

`crabbox cp` copies files or directories between the host and a Crabbox-owned

`crabbox desktop` drives a visible desktop session on a lease that was warmed

`crabbox doctor` runs a preflight before you commit to a long workflow. It is

`crabbox egress` gives a lease mediated outbound network: a lease-local browser

`crabbox events` prints the broker's event log for a recorded run.

`crabbox heartbeat` refreshes the idle deadline for one owned lease and prints

`crabbox history` lists recorded remote command runs from the broker. Each run is

`crabbox image` holds the trusted-operator controls for provider base images:

`crabbox init` onboards the current repository: it writes the minimal config

Claude Code skills for Chinese-narration recaps from supported video files, with optional editable JianYing/CapCut draft export. | 用 Claude Code skills 为支持的视频文件…

Drive the Unity Editor from an AI agent or the terminal. The Editor serves MCP itself over HTTP, so there is no second process to run, and the isuzu-unity-cli c…

面向企业的数字员工构建与运行平台：把专业员工的经验、流程与判断标准，固化为可随时上岗、可配置、可审批、可观测的 AI 数字员工。

A local-first, Pi-powered AI agent workspace for Desktop, WebUI, and CLI

660+ muapi-hosted generative-media models plus community-submitted third-party API tools (SEO, enrichment, social, scraping) — one YAML file per entry, browsabl…

A compounding agent OS for recursive agents. Also an open source alternative to Grok Bot and Meta's Muse.

Independent desktop client for OpenCode 2. Manage projects, sessions, parallel agents, requests, and changes on Linux and macOS.

Production agent skills for Claude Code, Cursor, and any SKILL.md harness — Codex fleets, video pipeline, monorepo review bundles, multi-chain explorer.

See and manage what your coding assistants load — skills, commands, subagents, plugins and MCP servers, with real usage.

An Enterprise-Grade Full-Stack RBAC Permission Management System Built with Go + React

Create AI Agents in a No-Code Visual Builder or TypeScript SDK with full 2-way sync. For shipping AI assistants and multi-agent AI workflows.

基于 DeepSeek Harness（DSH）的稳定桌面端，集成Git、内置浏览器与记忆功能 | DeepSeek Harness desktop GUI with local workspaces, Git, browser and memory.

⚡ Control Apache Airflow with natural language via MCP. Chat with your workflows using Claude, GPT, or any LLM — no REST API calls needed. Supports Airflow 2.x…

Open-source CLI, schemas, resolver, and DSH agent tools for DSH Plugin Hub

Pi Coding Agent 中文学习蓝皮书：从安装与第一个可验收任务开始，逐步掌握 Session、Context、Skill、Extension、Subagent 与长期 Agent 工作流。

Self-hosted framework for orchestrating fleets of specialist AI agents — ensemble reasoning and a full agentic coding pipeline, model-agnostic and local-friendl…

Self-hosted, vendor-neutral control plane for your local coding agents (Claude Code & Codex). Run your agents, on any plane.

A practical AI agents handbook covering agent systems, agentic workflows, LangGraph, MCP/A2A, context engineering, agent memory, evaluation, observability, and…

Vibe Coding 从入门到精通教程｜AI 结对编程工作流｜Prompt、Skill、Workflow、上下文管理、codex实战指南

Static security scanner for LLM agents — prompt injection, MCP config auditing, taint analysis. 51 rules mapped to OWASP Agentic Top 10 (2026). Works with LangC…