LLM Mart Basic

Track ENCODE experiments locally with publications, citations, and provenance. Use when the user wants to build a collection of experiments, manage citations, compare experiments, or track data provenance.

Query the UCSC Genome Browser REST API to retrieve regulatory tracks, DNA sequences, cCRE annotations, TF binding clusters, and track schemas for any genomic region. Use when the user wants to look up what regulatory elements exist at a genomic locus, retrieve DNA sequence under

Annotate genetic variants (GWAS hits, eQTLs, rare variants) with ENCODE functional data to interpret non-coding variation. Use when the user has variants of interest and wants to understand their regulatory context, identify causal variants from GWAS loci, assess variant impact o

Comprehensive guide for visualizing ENCODE data including deeptools heatmaps, IGV screenshots, UCSC track hubs, and publication-quality plots. Use when users need to create visualizations of ChIP-seq signal, peak landscapes, genome browser views, or any visual representation of E

Make software health, failure, degradation, and recovery visible through useful observability and diagnostics. Use when adding logs, metrics, traces, health checks, alerts, incident signals, or operational feedback.

Inspect the real repository, environment, dependencies, and runtime evidence before designing or changing software. Use for greenfield construction, unfamiliar codebases, uncertain behavior, or any task where assumptions could create rework.

Reflect on failures, incidents, reviews, and completed software work to turn evidence into durable tests, guardrails, documentation, and process improvements.

Debug software by making failures visible, reproducing them, finding contributing causes, and adding durable regression protection. Use for bugs, failing tests, incidents, regressions, flaky behavior, and unexplained production errors.

Improve software continuously through small, safe, behavior-preserving changes that reduce maintenance cost. Use for refactoring, cleanup, technical debt, naming, duplication, dead code, or post-change polish.

Choose simple, maintainable software designs by removing speculative complexity, comparing alternatives, and making explicit tradeoffs. Use for architecture, API, data-model, dependency, and scope decisions.

Implement software through small, repeatable, integrated vertical slices with clear exit criteria and honest verification. Use when a design is understood and code needs to be built or changed.

Review software with careful attention to correctness, maintainability, security, operations, and meaningful detail. Use for diffs, branches, pull requests, architecture decisions, or final quality checks.

Author a greenfield build blueprint in four gated stages — business logic, tech stack, logic-to-stack mapping, and a phase plan — each requiring explicit user approval before the next. Use when building a new project or a substantial new subsystem from scratch.

Step 0 of consequential software work under Monozukuri. Classify the task, assess its risk tier, choose execute or sensei mode, and compose the sequence of Monozukuri skills and the Definition of Done for it. Skip for trivial one-line edits, pure questions, and throwaway scripts.

Clarify software goals, constraints, stakeholders, and risks before consequential design or implementation work. Use for greenfield ideas, ambiguous requirements, architecture decisions, or changes where misunderstanding would be costly.

Prevent software mistakes through strong boundaries, safe defaults, meaningful tests, and mechanically enforced invariants. Use for TDD, validation, schemas, authorization, edge cases, regression coverage, or reliability-sensitive behavior.

Prepare software for responsible release, migration, deployment, rollback, and handoff with evidence about compatibility, health, ownership, and recovery.

Use when creating or updating AGENTS.md files, .github/copilot-instructions.md, or other AI agent rule files, onboarding AI agents to a project, standardizing agent documentation, or when anyone mentions AGENTS.md, agent rules, project onboarding, or codebase documentation for AI

Record a decision, document existing code, or file a supplied research material. Modes: document decision (ADR, RFC, or rule), document code (spec, doc, guide, or scenario for existing behavior), document research (only when a finished report or one external material is already i

First-time Archcore setup. Wires the host (MCP config, hooks, CLAUDE.md/AGENTS.md managed block), measures the authored context the repo already holds, then composes a first-day seed — stack rule, run guide, data-model, integrations, config, entry points, public surface, a linked

Fourteen posts of being wrong in production, compressed to checkboxes

Healthy nodes, a quiet network, 300 restarts in three days, and a latency budget measured in milliseconds

Discovery worked. Ping worked. Every TCP connection timed out, and later the tunnel only worked when someone had a terminal open.

Every VM came back. The cluster did not. Declarative systems converge on config, and the datapath isn't config.

A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.

A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.

None of the safety came from the model. It came from six boring habits.

Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.

Six hours in, one step left, everything green, and the incident that didn't happen

CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.

Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it

An API request routing a model's tool call through an approval gate to a remote MCP server

31 config keys, two audits, and why the first one was wrong in both directions

The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.

Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.

Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.

"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks

stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.

The most important rule wasn't about what I could change. It was about what I was allowed to display.

Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.

Plural alias for task status, pause, prompts, recovery, and ignore

Verify that the autorun plugin command surface is loaded

Tmux session management - create, list, cleanup isolated sessions, short for /ar:tmux

Tmux session management - create, list, cleanup isolated sessions

CLI testing in isolated tmux sessions, short for /ar:ttest

CLI testing in isolated tmux sessions

Graceful stop - finish current task then stop (short for /ar:stop)

Set AutoFile policy to ALLOW — permit creation of new files without justification

Refresh git commit guidelines before staging changes

Set AutoFile policy to FIND — restrict edits to existing files only

Start an autorun task with three-stage verification (initial → critical review → final verification)

Refresh the universal system design philosophy before designing or reviewing code

Show the current AutoFile policy and any active autorun state

Extract text from PDF files or directories to markdown

Trigger: `/ship` or "ship it" or "deploy to production"

Suppress 5-question enforcement for rapid sessions

Check a Dutch address for KPN outages and report what connectivity is available there

Find the KPN business-mobile contract for a lost or stolen phone and block its SIM after confirmation

Run the SkillOpt-Sleep cycle with the handoff backend — no API subprocess; this session answers the engine's model calls via prompt/answer files, in isolated fresh-context subagents

Run or manage the SkillOpt-Sleep self-evolution cycle (review past sessions, replay tasks through a selected backend, consolidate validated memory + skills, or schedule nightly runs)

Conduit — native SwiftUI iOS client for Hermes Agent

一个现代化的可视化规则引擎平台，用于编排复杂的 AI 工作流。在无限画布上设计、测试和部署 AI 流程——无需编写代码。结合 flowgram.ai 的能力与 Java 服务端，提供生产级工作流管理。在此之上提供AI Agent / Copilot的助手编排能力。

Job application tracker and AI-powered job search assistant. Helps job seekers manage their search journey with AI resume review, job matching, task logging, an…

📝 Markdown and HTML renderer for Svelte 5 — built for streaming AI agent output from Claude Code, ChatGPT, and agentic workflows. XSS-safe defaults, token cach…

ServiceNow MCP server: 500+ tools and 26 AI capabilities for any AI (Claude, ChatGPT, Gemini, Cursor, Copilot). Multi-transport (stdio, SSE, HTTP), A2A, dynamic…

Free crypto news API - real-time aggregator for Bitcoin, Ethereum, DeFi, Solana & altcoins. No API key required. RSS/Atom feeds, JSON REST API, historical archi…

Build production-ready AI agents in both Python and Typescript.

From agent user to agent builder: build a Claude Code-style coding agent from scratch in Python: 8 articles, 4 videos, one codebase

🪁 A lightweight, modern Kubernetes dashboard that unifies multi-cluster and resource management, enterprise-grade user governance (OAuth, RBAC, and audit logs)…

Stateful runtime management for LLM agents—inject, manipulate, and retrieve Python objects across turns.

AgentCall lets AI Agents join meetings with voice, video & screen-share to build together. Supports Google Meet, Teams, Zoom (Beta)

Kition brings Markdown, DataTable, WhiteBoard, a tool-using AI agent, browser research, and visual workflows into one desktop workspace.

IntentKit is an open-source, self-hosted cloud agent cluster that manages a collaborative team of AI agents for you.

A powerful Model Context Protocol (MCP) server providing comprehensive Google Maps API integration with LLM processing capabilities.

Turn your Claude Pro/Max subscription into an OpenAI-compatible API for your IDEs and devices — LAN auth, per-key quotas, response cache, disciplined cli.js ali…

Paw Work - selection-first web agent for Chrome: select on the live page, describe the outcome, take away an editable office file. BYOK, sandboxed, no server.

基于 AI Agent + MCP 工具链 + 渗透 Skill 编排， 配合大语言模型， 自然语言输入 → 自动完成「信息收集 → 漏洞发现 → 漏洞利用 → 报告生成」全流程。

Lexora — Personal AI workspace built around Desktop / 以 Desktop 为核心的个人 AI 工作台

First AI Journey for DevOps - with comprehensive learning paths, practical tips, and enterprise guidelines

AI coding agent with one Python core and three front-ends — headless CLI, Textual TUI, and an Electron desktop. Works with any OpenAI-compatible API, with risk-…