LLM Mart Basic
@llm-mart · Joined Jun 2026
Rigorously review code or pull requests for correctness, security, accessibility, maintainability, tests, and edge cases. Use when users request a critical code review, want a guided walkthrough of findings, need implementer-facing feedback, or want to prepare, create, or submit
Research a codebase and create architectural documentation describing how features or systems work. Use when the user asks to: (1) Document how a feature works, (2) Create an architecture overview, (3) Explain code structure for onboarding or knowledge transfer, (4) Research and
Create and manage todo tracking documents for features, bugs, and multi-step tasks. Use when starting new work that benefits from a persistent record of decisions, progress, and context.
Review test code for quality, design, and completeness after implementing a feature or fixing a bug. Use when the user asks to "review my tests", "check my test quality", "are these tests good enough", "review testing", or after completing a feature implementation that includes t
Set a tracking document as the source of truth for the current feature or task. Use when starting work on a feature, bug fix, or multi-step task that benefits from a persistent record of decisions, discoveries, and progress. Keeps the document updated as work proceeds.
Address PR review feedback by systematically working through every unresolved PR review thread on the current branch's PR - analyze each comment, make the requested code changes (with tests where useful), commit, and optionally reply and resolve.
Bulk resolve unresolved PR review threads on the current branch’s PR — typically after threads have been addressed manually or via /pr-threads-address
Create professional package release blog posts following Tidyverse or Shiny blog conventions. Use when the user needs to: (1) Write a release announcement blog post for an R or Python package for tidyverse.org or shiny.posit.co, (2) Transform NEWS/changelog content into blog form
Create a release checklist and GitHub issue for an R package. Use when the user asks to "create a release checklist" or "start a release" for an R package.
Best practices for writing R package tests using testthat version 3+. Use when writing, organizing, or improving tests for R packages. Covers test structure, expectations, fixtures, snapshots, mocking, and modern testthat 3 patterns including self-sufficient tests, proper cleanup
Comprehensive R package for command-line interface styling, semantic messaging, and user communication. Use this skill when working with R code that needs to: (1) Format console output with inline markup and colors, (2) Display errors, warnings, or messages with cli_abort/cli_war
Prepare R packages for CRAN submission by checking for common ad-hoc requirements not caught by devtools::check(). Use when: (1) Preparing a package for first CRAN release, (2) Preparing a package update for CRAN resubmission, (3) Reviewing a package to ensure CRAN compliance, (4
Guidance for managing R package lifecycle according to tidyverse principles using the lifecycle package. Use when: (1) Setting up lifecycle infrastructure in a package, (2) Deprecating functions or arguments, (3) Renaming functions or arguments, (4) Superseding functions, (5) Mar
R package development with devtools, testthat, and roxygen2. Use when the user is working on an R package, running tests, writing documentation, or building package infrastructure.
Build command-line apps in R using the Rapp package. Use when creating a CLI tool in R, adding argument parsing to an R script, turning an R script into a command-line app, shipping CLIs in an R package, or using Rapp (the alternative Rscript front-end). Also use for shebang scri
Help users write correct R code for async, parallel, and distributed computing using mirai. Use when users need to run R code asynchronously or in parallel, write mirai code with correct dependency passing, set up parallel workers, convert from future or parallel, use mirai_map,
Generate and improve accessible alt text for data visualizations and images in R packages and Quarto documents. Use when the user wants to add, improve, or audit alt text for figures in a pkgdown site or .qmd files. Activate for requests that mention fig-alt, fig.alt, figure desc
Create and use brand.yml files for consistent branding across Shiny apps and Quarto documents. Covers: (1) Creating new _brand.yml files, (2) Applying to Shiny (R and Python), (3) Using in Quarto, (4) Modifying existing files, and (5) Troubleshooting. Includes complete specificat
Build modern Shiny dashboards and applications using bslib (Bootstrap 5). Use when creating new Shiny apps, modernizing legacy apps (fluidPage, fluidRow/column, tabsetPanel, wellPanel, shinythemes), or working with bslib page layouts, grid systems, cards, value boxes, navigation,
Advanced theming for Shiny apps using bslib and Bootstrap 5. Use when customizing app appearance with bs_theme(), Bootswatch themes, custom colors, typography, brand.yml integration, Bootstrap Sass variables, custom Sass/CSS rules, dark mode and color modes, dynamic theme switchi
Fourteen posts of being wrong in production, compressed to checkboxes
Healthy nodes, a quiet network, 300 restarts in three days, and a latency budget measured in milliseconds
Discovery worked. Ping worked. Every TCP connection timed out, and later the tunnel only worked when someone had a terminal open.
Every VM came back. The cluster did not. Declarative systems converge on config, and the datapath isn't config.
A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.
A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.
None of the safety came from the model. It came from six boring habits.
Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.
Six hours in, one step left, everything green, and the incident that didn't happen
CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.
Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it
An API request routing a model's tool call through an approval gate to a remote MCP server
31 config keys, two audits, and why the first one was wrong in both directions
The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.
Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.
Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.
"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks
stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.
The most important rule wasn't about what I could change. It was about what I was allowed to display.
Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.
/browse-files
browse-files
List, search, and inspect ENCODE files by format, type, and assembly
/cite-encode
cite-encode
Generate ENCODE citations for publications, grants, and presentations
/compare-experiments
compare-experiments
Check if two ENCODE experiments are compatible for combined analysis
/cross-reference
cross-reference
Cross-reference ENCODE data with PubMed, GEO, ClinicalTrials, and bioRxiv
/download-encode
download-encode
Download ENCODE files (BED, FASTQ, BAM, bigWig) with MD5 verification
/log-provenance
log-provenance
Log derived files and trace provenance back to ENCODE source data
/manage-credentials
manage-credentials
Store, check, or clear ENCODE API credentials for restricted data
/quality-check
quality-check
Assess ENCODE experiment quality using audit counts and replicate counts
/search-encode
search-encode
Search ENCODE experiments by assay, organ, biosample, or target
/track-experiments
track-experiments
Track ENCODE experiments locally with publications and provenance
/browse-files
browse-files
List, search, and inspect ENCODE files by format, type, and assembly
/cite-encode
cite-encode
Generate ENCODE citations for publications, grants, and presentations
/compare-experiments
compare-experiments
Check if two ENCODE experiments are compatible for combined analysis
/cross-reference
cross-reference
Cross-reference ENCODE data with PubMed, GEO, ClinicalTrials, and bioRxiv
/download-encode
download-encode
Download ENCODE files (BED, FASTQ, BAM, bigWig) with MD5 verification
/log-provenance
log-provenance
Log derived files and trace provenance back to ENCODE source data
/manage-credentials
manage-credentials
Store, check, or clear ENCODE API credentials for restricted data
/quality-check
quality-check
Assess ENCODE experiment quality using audit counts and replicate counts
/search-encode
search-encode
Search ENCODE experiments by assay, organ, biosample, or target
/track-experiments
track-experiments
Track ENCODE experiments locally with publications and provenance
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