LLM Mart Basic

The Checkpoint Harmony Email (Avanan) whitelist and blacklist surface: the match fields and matching modes an exception accepts, the defaults that widen an entry beyond what was typed, the id mismatch between listing and editing, and the standing security consequence of a detecti

Discover and compare Jev and TypeSafe SDKs, integrations, applications, and evaluations. Use when selecting public resources for a typed-decision workflow or checking what evidence exists for a Jev claim.

Flint · local-skills-hub — a local-first personal AI skills asset manager. Centralize, tag, deduplicate skills, and deploy them into agent and project directori…

Inspect PDF, Microsoft Office (docx/xlsx/pptx and legacy doc/xls/ppt), and Apple iWork (key/numbers/pages) files without opening or rendering them. Use for page and slide and sheet counts, title/author/created metadata, encryption and macro and digital-signature and JavaScript ri

A coding agent harness built specifically for Motif-3

Build comprehensive chromatin accessibility maps by aggregating ATAC-seq and DNase-seq narrowPeak data across multiple ENCODE experiments, donors, and labs. Use when the user wants to answer "where is chromatin accessible in my tissue?" by combining peak calls into a union peak s

Guide for multi-experiment batch operations: QC screening, batch download, comparison, and report generation across many ENCODE experiments simultaneously. Use when users need to process 5+ experiments together, create experiment comparison tables, perform batch quality checks, o

Install bioinformatics tools for ENCODE data analysis. Covers CLI tools (BWA, STAR, samtools, MACS2), R/Bioconductor packages (DESeq2, Seurat, ChIPseeker), Python packages (Scanpy, deeptools), and Nextflow pipeline infrastructure. Generates conda environments, R install scripts,

Guide for integrating CellxGene Census single-cell data with ENCODE bulk experiments. Use when users need cell-type-specific expression context for ENCODE regulatory data, want to deconvolve bulk ENCODE signals, or validate regulatory elements at single-cell resolution. Trigger o

Generate proper ENCODE citations for publications, grants, and presentations. Use when the user needs to cite ENCODE data, create bibliography entries, write acknowledgment sections, or ensure compliance with ENCODE data use policy.

Guide for annotating ENCODE regulatory variants with ClinVar clinical significance. Use when users need to check if variants in ENCODE peaks have clinical associations, find pathogenic variants in regulatory regions, or assess variant clinical impact. Trigger on: ClinVar, clinica

Compare ENCODE experiments across different biosamples, tissues, or cell lines to identify tissue-specific regulatory patterns. Use when the user wants cross-tissue comparison, cell-type comparison, tissue-specific elements, differential chromatin, biosample matching, disease vs

Cross-reference ENCODE data with PubMed, bioRxiv, ClinicalTrials.gov, Open Targets, GTEx, ClinVar, GWAS Catalog, gnomAD, Ensembl, and other scientific databases. Use when the user wants to find publications, preprints, or clinical trials related to ENCODE experiments, chain ENCOD

Use ENCODE functional genomics data for disease mechanism research. Use when the user wants to connect GWAS variants to regulatory elements, annotate disease-associated loci with functional data, identify therapeutic targets from epigenomic data, build disease regulatory models,

Download ENCODE genomics files (BED, FASTQ, BAM, bigWig, etc.) to the user's machine. Use when the user wants to download data files from ENCODE experiments.

Query the Ensembl REST API for regulatory feature annotations, variant effect prediction (VEP), coordinate liftover, gene lookups, and cross-references. Use when the user needs to annotate variants with VEP (consequence, CADD, REVEL, SpliceAI), check Ensembl Regulatory Build over

Build comprehensive epigenomic profiles for tissues or cell types using ENCODE data. Use when the user wants to characterize chromatin states, assemble histone modification panels, create epigenomic landscapes, run ChromHMM segmentation, identify super-enhancers or bivalent domai

Analyze ENCODE functional genomics screens including CRISPR screens, MPRA (Massively Parallel Reporter Assays), and STARR-seq. Find screen data in ENCODE, process results, identify functional elements, and integrate with epigenomic annotations.

Search, query, and cross-reference NCBI GEO (Gene Expression Omnibus) datasets with ENCODE experiments. Use when the user wants to find GEO accessions for ENCODE experiments, search GEO for complementary datasets, download GEO metadata or series matrices, cross-reference ENCODE a

Query gnomAD (Genome Aggregation Database) for population allele frequencies, gene constraint scores, and variant annotations to interpret ENCODE regulatory variants. Use when the user needs allele frequencies for variants in ENCODE regulatory elements, wants to assess gene const

Every VM came back. The cluster did not. Declarative systems converge on config, and the datapath isn't config.

A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.

A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.

None of the safety came from the model. It came from six boring habits.

Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.

Six hours in, one step left, everything green, and the incident that didn't happen

CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.

Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it

An API request routing a model's tool call through an approval gate to a remote MCP server

31 config keys, two audits, and why the first one was wrong in both directions

The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.

Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.

Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.

"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks

stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.

The most important rule wasn't about what I could change. It was about what I was allowed to display.

Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.

Use MCP Inspector to connect to local or remote servers, inspect capabilities, call tools, read resources, test prompts, and diagnose failures before release.

Build an MCP server in TypeScript with focused tools, validated schemas, local and remote transports, Inspector tests, and production security controls.

An MCP server exposes tools, resources, or prompts through a standard protocol so an AI application can discover and use external capabilities.

`crabbox attach` follows the recorded events of an active coordinator run and

`crabbox azure` groups Azure provider setup commands. It currently has a single

`crabbox bench` records and reports local benchmark timing observations. It is a

`crabbox cache` inspects, purges, or warms package and build caches on a

`crabbox capsule` captures, replays, and tracks lightweight failure capsules.

Save the state of a lease, then restore it onto another box or fork it into a

`crabbox claims list` prints the lease claims stored on the current machine. It

`crabbox cleanup` sweeps direct-provider machines and local provider state that

`crabbox code` bridges a Linux lease's `code-server` workspace into the

`crabbox config` inspects and updates user configuration. It has three

`crabbox connect` resolves a lease and opens an interactive SSH session to it.

`crabbox cp` copies files or directories between the host and a Crabbox-owned

`crabbox desktop` drives a visible desktop session on a lease that was warmed

`crabbox doctor` runs a preflight before you commit to a long workflow. It is

`crabbox egress` gives a lease mediated outbound network: a lease-local browser

`crabbox events` prints the broker's event log for a recorded run.

`crabbox heartbeat` refreshes the idle deadline for one owned lease and prints

`crabbox history` lists recorded remote command runs from the broker. Each run is

`crabbox image` holds the trusted-operator controls for provider base images:

`crabbox init` onboards the current repository: it writes the minimal config

Paper trading simulator for Polymarket — built for AI agents. MCP server, live order books, strategy backtesting. Install: npx clawhub install polymarket-paper-…

An SSH tool dedicated to addressing all pain points · (macOS/Windows/Linux/Android/iOS)

The first AI agent harness native to the browser. A browser extension that runs a full agent loop where you already work: it drives your tabs, spins up sandboxe…

SmartLabel AI 2026: Auto-Annotate Any Object via LLM-Powered Prompt Parsing

Local-first visual generation runtime and studio for people and coding agents, with reproducible image and video workflows across multiple providers.

Scholar All-In-One: A research infrastructure for AI agents

Give your AI agent a real browser — with a human in the loop. Open-source MCP-native browser agent.

同花顺免费开源AI插件FQGate-agent（原插件名 tonghuasun-agent）：为 Codex、Claude Code、DeepSeek 等 AI 工具提供本机 A 股实时行情、K 线、Level-2、资讯、账户查询与可选交易能力。

A non-linear AI agent workbench — session is a tree: branch anytime, and context follows the branch

Production-grade AutoCAD MCP server for AI agents — 122 tools, dual COM (live AutoCAD) + headless ezdxf engines, ISO GD&T and dimension-tolerance validation for…

A DeepSeek coding agent harness: persistent shell, Ultra subagents, auto approval, Chrome MCP and session telemetry

Waku Waku! Waku Agent is a local-first AI agent harness you actually own, including loop, memory, eval, all in code built to stay legible as it grows.

Remote control for Claude Code, Codex, Grok, and Cursor on Mac or PC. View sessions, send tasks, and drive them remotely from your phone, PIN, or Ring. OpenClaw…

Next-gen AI-native server ops panel with an in-workspace SRE agent. Crash self-healing, safe rollbacks, Docker/game servers, and local Ollama support.

Professional cloud architecture diagrams with official AWS, Azure and GCP icons, from Terraform code or a plain JSON graph. MCP server + agent skill.

A ready-to-use self-growing desktop AI assistant for long-running tasks, memory, agents, tool reviews, MCP, and high-concurrency workspace automation. / 开箱即用的自我…

Collection of templates using the Alchemyst AI Platform for your next big AI app.

Fast, exact LLM decoding on Apple Silicon (MLX) behind an OpenAI-compatible endpoint

The open source AI research agent.