LLM Mart Basic

Retrieve, verify, and synthesize scientific literature. Use for seminal-paper lookups, evidence summaries, method comparisons, and gap analyses. Every citation must come from a live lookup, never from memory; retractions are checked; the deliverable is argued prose with resolvabl

Configure the local wisp-science runtime — uv/Python bootstrap, Node+scimaster-cli for bear-* literature skills, pixi for bioinformatics multi-env analysis. Detect mainland-China network and apply mirrors. Use when Capabilities shows missing Python/uv/Node/sci/pixi, bootstrap err

Judge and reshape the story told by a manuscript and its figure deck. Use when revising paper structure, testing whether Figure 1 is a hook, ordering figures, moving panels, identifying missing analyses, or defining the claim passed to figure-composer.

Use this skill when the user has attached a PDF, paper, report, or other document and the answer needs its content: summarize a section, compare sections, read specific pages, check the table of contents, or read a value off a figure. The `read` tool cannot parse PDF binary — pyt

Use when creating, migrating, or debugging pixi environments, especially for scientific Python, bioinformatics, single-cell analysis, CUDA/PyTorch, Jupyter/VS Code kernels, conda-to-pixi migration, or conda + PyPI mixed dependency issues.

Inspect a registered execution server before compute planning and interpret its persisted capability profile. Use when a server is added, when the user clicks Probe, before enabling an unfamiliar SSH/WSL resource, or when deciding whether GPU, sudo/root, a scheduler, Python, R, c

Plan, configure, validate, and document portable public-bioinformatics data acquisition. Use for GEO/GSE/GDS, SRA/ENA, TCGA/GDC, GTEx, DepMap, public expression matrices, raw reads, release files, manifests, resumable downloads, and reusable local caches. Keep the workflow provid

Submit recoverable SSH-direct research Runs with live progress cards and model-free monitoring.

Wisp-science's actual agent tool surface and runtime boundaries. Load this when deciding which Wisp tool can perform a task, checking whether Python can reach agent or desktop capabilities, choosing between interactive analysis and persisted Runs, or answering questions about del

Use when designing, reviewing, or implementing single-cell RNA-seq QC in Python or R with a human-in-the-loop, data-driven approach. Trigger for scRNA QC metrics, per-sample diagnosis, threshold discussion, mitochondrial/ambient/doublet assessment, MAD vs fixed cutoffs, or refact

Create, update, validate, and evaluate Wisp skills. Use when authoring a project-local or installable skill, refining its trigger description, adding deterministic scripts or Python sidecars, or testing whether another Agent can follow the workflow.

Turn a scientific conversation, paper takeaway, or figure story into paste-ready social copy. Use when the user asks for 小红书文案, a Xiaohongshu note, 微信/朋友圈, 公众号草稿, a tweet, Twitter/X copy, or share-to-social text from a Wisp session. Ask which platform unless the user already name

Build, audit, authorize, recover, or finalize dynamic Zotero citations and bibliographies in Microsoft Word DOCX files with a protected-source, digest-bound workflow. Use for Word–Zotero citation conversion, static OOXML citation audits, mocked/offline validation, Refresh authori

For each reviewer question on a PR, recall implementation reasoning and compose a raw answer. Use when the user asks to "answer reviewer questions", "draft answers to PR questions", or "explain reviewer questions".

Apply findings by making the suggested code changes. Applies accepted verdicts, escalates ambiguous findings to the user, and offers to note genuine improvements for later. Use when the user asks to "apply findings", "apply fixes", "apply suggestions", "apply accepted findings",

Assess project-wide structural technical debt: complexity hotspots, deprecated API usage, duplication clusters, and architecture rot. Ranks findings by impact and refactor effort into a report at .turbo/technical-debt.md. Use when the user asks to "assess technical debt", "find t

Project-wide health audit pipeline that fans out to all analysis skills in parallel, evaluates findings, and produces a unified report at .turbo/audit.md. Use when the user asks to "audit the project", "run a full audit", "project health check", "audit my code", "codebase audit",

Shared changelog conventions and formatting rules referenced by /create-changelog and /update-changelog. Not typically invoked directly.

Enforce existence, reuse, mirror, and symmetry principles to keep new code minimal and consistent with surrounding code. Use when writing new code in an existing codebase, adding new features, refactoring, or making any code changes.

Run autonomous task execution using the codex CLI. Use when the user asks to "codex exec", "run codex exec", "execute a task with codex", or "delegate to codex".

Discovery worked. Ping worked. Every TCP connection timed out, and later the tunnel only worked when someone had a terminal open.

Every VM came back. The cluster did not. Declarative systems converge on config, and the datapath isn't config.

A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.

A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.

None of the safety came from the model. It came from six boring habits.

Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.

Six hours in, one step left, everything green, and the incident that didn't happen

CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.

Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it

An API request routing a model's tool call through an approval gate to a remote MCP server

31 config keys, two audits, and why the first one was wrong in both directions

The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.

Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.

Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.

"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks

stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.

The most important rule wasn't about what I could change. It was about what I was allowed to display.

Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.

Use MCP Inspector to connect to local or remote servers, inspect capabilities, call tools, read resources, test prompts, and diagnose failures before release.

Build an MCP server in TypeScript with focused tools, validated schemas, local and remote transports, Inspector tests, and production security controls.

Assemble the governance record for a range — commits, overrides, ADRs, sprint auto-decisions, open questions, checkpoint findings — into one dated audit packet. Read-only.

Lightweight Q&A about the project — answer from context and return, no routing, no state change.

Periodic multi-reviewer sweep of the whole codebase — surfaces a triaged checkpoint report.

Sanctioned lane for non-behavioral work — docs-only edits, dependency bumps, reverts. Type-scaled gates; no TDD demanded of prose.

Clean up an already-merged local branch after proving containment. Confirm each discard and preserve unique work.

Show the codeArbiter command catalog — the public command list and what each routes to.

Create a verified local Git commit when committing changes is requested. Not for explaining commit history, drafting a message only, or postponing a commit. Applies every commit gate and never implies a push or PR.

Stop everything and surface a rule conflict — persona vs. docs vs. code. Present both sides and the conflict-hierarchy level; the user resolves. No silent reconciliation.

Audit stale provenance-tracked docs on request. Report first; re-scout or re-baseline only for selected docs.

Build project context from an existing codebase through isolated scouts, resolve gaps, and preserve initialization gates.

Investigate an unexplained defect or unexpected behavior without changing application code. Use for root-cause diagnosis and an evidence-backed handoff. A no-action close records a board note. Not for implementing a known fix, new features, or explanation-only questions.

Develop greenfield project context through a layered interview, preserve decisions, and initialize only after the required gates.

Verify the active host install, package, command ownership, enforcement, and harmless live-fire probe. Read-only.

Start a feature: brainstorm a spec, get it approved, then drive it test-first through the pipeline. The one entry to implementation.

Fix a confirmed bug: a failing regression test first, then a minimal fix, then the rest of the tdd gates.

Opt this repo into codeArbiter — scaffold the root-level .codearbiter/ state store.

Read-only 3-metric governance glance — override rate, small-lane rate, sprint low-confidence ratio — each with a trend arrow vs. the prior 20-commit window.

Sanctioned, logged bypass of a gate or hard rule — one audit line, then proceed.

Open a PR or finish branch disposition; route CI watching and post-merge cleanup to their owners. Merge and discard need explicit authority.

Zero-onboarding, read-only dry-run of the reviewer fleet against the current uncommitted diff. Predicts reviewers, runs the state-free secret scan, writes nothing.

Your Personal AI Assistant; easy to install, deploy on your own machine or on the cloud; supports multiple chat apps with easily extensible capabilities.

Agent OS: the agent gets smarter on its own. We just hold the line: the grading command and expected result never make it into the success contract we hand it.…

Curated systems, benchmarks, and papers etc. on memory for LLMs/MLLMs --- long-term context, retrieval, and reasoning.

:memo: Vimlike Modal Text Editor in Rust

CI-native security testing for MCP servers. Attack simulation, schema drift detection, and health scoring before agents depend on them.

Hermes Agent memory plugin/provider for scope-aware recall, SQLite truth, LanceDB semantic search, and hybrid retrieval.

For You Agent——AI 时代的个人随身数字人格。把你的模型、AI 账号、技能、提示词和工作方式，带到每一个 AI 工具里。

A coding agent: give it a prompt and it reads, writes, runs commands, and searches code in a loop until the work is done, using native tool-calling across OpenA…

A secure persistent personal agent server in Rust. One binary, sandboxed execution, multi-provider LLMs, voice, memory, Telegram, WhatsApp, Discord, Teams, and…

Self-evolving agent: grows skill tree from 3.3K-line seed, achieving full system control with 6x less token consumption

DeepSeek Harness Desktop (dsh-desktop). EAC: Embracing All Creation (揽尽万象). Bundled Node.js runtime with full dsh-CLI kernel, one-click startup, 10 built-in UI…

See your agent think. Zero-config observability & governance for 26 AI agent runtimes: Claude Code, Cursor, OpenAI Codex, GitHub Copilot, Gemini CLI, Cline, Ope…

Save 94% on AI coding tokens. Index your codebase, agents search instead of reading files. Works with Claude Code, Codex, Copilot, Cursor, Gemini CLI. Local MCP…

Yet another coding agent harness, lightweight and written in go.

a coding Agent from pi. ∞ providers, sub-agents, hashline edits, and a permission gate

Omnigent is an open-source AI agent framework and meta-harness: orchestrate Claude Code, Codex, Cursor, Pi, and custom agents — swap harnesses without rewriting…

🧠 Leon is your open-source personal assistant.

The Station, an open-world multi-agent environment that models a miniature scientific ecosystem.

The Frontend Stack for Agents & Generative UI. React, Angular, Mobile, Slack, and more. Makers of the AG-UI Protocol

VelaTerm = iTerm2 + Codex, The Best Terminal for AI Coding