LLM Mart Basic
@llm-mart · Joined Jun 2026
Scalable deep-learning training with PyTorch Lightning — organize PyTorch code into LightningModules, configure Trainers for multi-GPU/TPU, build data pipelines and callbacks, log to W&B or TensorBoard, and run distributed training (DDP, FSDP, DeepSpeed). Use when structuring PyT
Classical machine learning in Python with scikit-learn — algorithms, preprocessing, pipelines, and best-practice reference documentation. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model ev
Survival analysis and time-to-event modeling in Python with scikit-survival. Use when working with censored survival data, fitting Cox models, Random Survival Forests, Gradient Boosting models, or Survival SVMs, evaluating predictions with concordance index or Brier score, handli
Model interpretability and explainability with SHAP (SHapley Additive exPlanations) — feature importance and plots (waterfall, beeswarm, bar, scatter, force, heatmap). Use when explaining ML model predictions, computing feature importance, debugging models, analyzing bias or fair
Process-based discrete-event simulation in Python with SimPy — processes, queues, shared resources, and time-based events. Use when simulating systems where entities contend for shared resources over time, such as manufacturing systems, service operations, network traffic, or log
Trains single-agent reinforcement learning agents with Stable-Baselines3 — PPO, SAC, DQN, TD3, DDPG, and A2C behind a scikit-learn-like API. Use for standard single-agent RL experiments, quick prototyping, well-documented algorithm implementations on Gymnasium environments, or ad
Guided statistical analysis with hypothesis-test selection, assumption checking, effect sizes, power analysis, and APA-formatted reporting using scipy.stats, statsmodels, and pingouin (Bayesian alternatives with PyMC). Use when choosing and running the appropriate statistical tes
Statistical modeling in Python with statsmodels — OLS/WLS/GLS, GLM, discrete-choice and count models, mixed models, ARIMA/SARIMAX/VAR, with diagnostics, robust standard errors, and coefficient-level inference. Use when fitting specific model classes for econometrics, time series,
Forecasts time series zero-shot with Google's TimesFM foundation models — TimesFM 2.5 (200M, Apache-2.0 weights; ForecastConfig API, XReg covariates) and TimesFM 3.0 (~330M, multivariate with native past/future covariates; non-commercial weights) — producing point forecasts and q
Graph Neural Networks with PyTorch Geometric (PyG) — node and graph classification, link prediction, GCN, GAT, and GraphSAGE layers, heterogeneous graphs, and molecular property prediction. Use when building or training GNNs for geometric deep learning on graph-structured data. P
Loads, runs, and fine-tunes pretrained models with Hugging Face Transformers v5 (PyTorch-only) — pipeline() inference for chat-model text generation, text classification, NER, zero-shot, speech recognition, image classification, object detection, and image-text-to-text VLMs; Auto
Nonlinear dimensionality reduction with UMAP — fast manifold learning for 2D/3D visualization, clustering preprocessing (e.g., HDBSCAN), and supervised or parametric UMAP. Use when projecting high-dimensional data to low dimensions for visualization, embedding generation, or as a
Out-of-core tabular analytics with Vaex — memory-mapped HDF5/Arrow/Parquet via vaex.open, lazy virtual columns, delayed single-pass aggregations on billion-row tables, binned histograms/heatmaps, and vaex.ml transformers on one machine. Vaex is in minimal-maintenance mode (vaex-c
Access the AlphaFold DB of 240M+ AI-PREDICTED protein structures (v6, plus precomputed homodimer/heterodimer complexes) — retrieve models by UniProt accession, download PDB/mmCIF files, and analyze prediction confidence metrics (pLDDT, PAE). Use when a UniProt ID needs a computat
Search and retrieve preprints from arXiv via the Atom API by keywords, authors, arXiv IDs, date ranges, or subject categories. Use when finding or fetching papers in physics, mathematics, computer science, quantitative biology, quantitative finance, statistics, electrical enginee
Query BindingDB for measured protein-ligand binding affinities (Ki, Kd, IC50, EC50) via its keyless REST API or the full TSV download, searching by target (UniProt ID), compound (SMILES), or pathogen. Use when looking up experimental binding constants, profiling inhibitors of a p
Search the bioRxiv preprint server and retrieve paper metadata or download PDFs via its API. Use when finding life sciences preprints by keywords, authors, DOI, date ranges, or categories, or when conducting a biology literature review of not-yet-peer-reviewed work. Part of the A
Access the BRENDA enzyme database via its SOAP API to retrieve kinetic parameters (Km, kcat, Ki), reaction equations, organism data, and substrate-specific enzyme information indexed by EC number. Use when looking up enzyme kinetics, turnover numbers, or substrate specificity for
Query cBioPortal via its keyless REST API for cancer genomics across TCGA, GENIE, MSK-IMPACT and hundreds of studies — somatic mutations, copy-number alterations (GISTIC), mRNA/protein expression, structural variants, and patient-level clinical/survival data. Use when asked how o
Query ChEMBL via the chembl_webresource_client Python client for curated bioactive molecules and drug-like compound libraries at scale — search compounds by structure or physicochemical properties, retrieve bioactivity measurements (IC50, Ki, EC50), and find inhibitors of a targe
/audit
Audit
Assemble the governance record for a range — commits, overrides, ADRs, sprint auto-decisions, open questions, checkpoint findings — into one dated audit packet. Read-only.
/btw
Btw
Lightweight Q&A about the project — answer from context and return, no routing, no state change.
/checkpoint
Checkpoint
Periodic multi-reviewer sweep of the whole codebase — surfaces a triaged checkpoint report.
/chore
Chore
Sanctioned lane for non-behavioral work — docs-only edits, dependency bumps, reverts. Type-scaled gates; no TDD demanded of prose.
/cleanup
Cleanup
Clean up an already-merged local branch after proving containment. Confirm each discard and preserve unique work.
/commands
Commands
Show the codeArbiter command catalog — the public command list and what each routes to.
/commit
Commit
Create a verified local Git commit when committing changes is requested. Not for explaining commit history, drafting a message only, or postponing a commit. Applies every commit gate and never implies a push or PR.
/conflict
Conflict
Stop everything and surface a rule conflict — persona vs. docs vs. code. Present both sides and the conflict-hierarchy level; the user resolves. No silent reconciliation.
/context-check
Context check
Audit stale provenance-tracked docs on request. Report first; re-scout or re-baseline only for selected docs.
/create-context
Create context
Build project context from an existing codebase through isolated scouts, resolve gaps, and preserve initialization gates.
/debug
Debug
Investigate an unexplained defect or unexpected behavior without changing application code. Use for root-cause diagnosis and an evidence-backed handoff. A no-action close records a board note. Not for implementing a known fix, new features, or explanation-only questions.
/decompose
Decompose
Develop greenfield project context through a layered interview, preserve decisions, and initialize only after the required gates.
/doctor
Doctor
Verify the active host install, package, command ownership, enforcement, and harmless live-fire probe. Read-only.
/feature
Feature
Start a feature: brainstorm a spec, get it approved, then drive it test-first through the pipeline. The one entry to implementation.
/fix
Fix
Fix a confirmed bug: a failing regression test first, then a minimal fix, then the rest of the tdd gates.
/init
Init
Opt this repo into codeArbiter — scaffold the root-level .codearbiter/ state store.
/metrics
Metrics
Read-only 3-metric governance glance — override rate, small-lane rate, sprint low-confidence ratio — each with a trend arrow vs. the prior 20-commit window.
/override
Override
Sanctioned, logged bypass of a gate or hard rule — one audit line, then proceed.
/pr
Pr
Open a PR or finish branch disposition; route CI watching and post-merge cleanup to their owners. Merge and discard need explicit authority.
/preview
Preview
Zero-onboarding, read-only dry-run of the reviewer fleet against the current uncommitted diff. Predicts reviewers, runs the state-free secret scan, writes nothing.
Make any song you can imagine
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