LLM Mart Basic
@llm-mart · Joined Jun 2026
Predicts protein-ligand binding poses with DiffDock diffusion-based molecular docking from PDB structures and SMILES, producing pose confidence scores for virtual screening and structure-based drug design. Use when docking ligands into a protein, generating binding poses, or scre
Computes mass-spectral similarity and identifies compounds for metabolomics with matchms — comparing mass spectra, scoring similarity (cosine, modified cosine), and searching spectral libraries to annotate unknowns. Use when matching MS/MS spectra, identifying metabolites, or lib
Applies medicinal-chemistry filters with the medchem library — drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, and molecular complexity metrics for compound prioritization and library cleanup. Use when filtering or triaging a compound library, flagging PA
Featurizes molecules for machine learning with molfeat — ECFP/MACCS/MAP4 fingerprints, RDKit and Mordred physicochemical descriptors, pharmacophore and shape descriptors, and pretrained embeddings (ChemBERTa, ChemGPT, CheMeleon) exposed as scikit-learn transformers that convert S
Queries the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biomedical relationships across genes, drugs, diseases, phenotypes, pathways, and biological processes. Use when exploring drug-disease or gene-disease links, building disease-centric knowledge subgraphs, or
Loads Therapeutics Data Commons (TDC, PyTDC) AI-ready drug-discovery datasets and benchmarks — ADME, toxicity, drug-target interaction (DTI), scaffold splits, and molecular oracles for therapeutic ML and pharmacological prediction. Use when fetching a standardized benchmark datas
Provides the RDKit cheminformatics toolkit for low-level, fine-grained molecular primitives — SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure/SMARTS search, 2D/3D coordinate generation, similarity, and reaction handling. Use when custom sanitization,
Drives the Rowan cloud quantum-chemistry platform via its Python API for computational chemistry — pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2), wi
Builds PyTorch-native graph neural networks with TorchDrug for molecules and proteins, exposing custom GNN architectures, task/dataset abstractions, molecular generation, retrosynthesis planning, and knowledge-graph reasoning. Use when a project specifically needs TorchDrug's dat
Generates professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings — biomarker-stratified patient cohort analyses with outcomes and evidence-based treatment recommendation reports with decision algorithms, supporting GRADE evidence
Prepares ISO 13485 certification documentation for medical device Quality Management Systems (QMS) — gap analysis of existing documentation, Quality Manuals, required procedures and work instructions, and Medical Device Files. Use for ISO 13485 QMS documentation, conducting a doc
Processes and analyzes physiological biosignals with the NeuroKit2 Python toolkit — ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements, or when
Reads, writes, and manipulates DICOM (Digital Imaging and Communications in Medicine) medical imaging files with the pydicom Python library. Use when reading/writing/modifying DICOM data, extracting pixel data from CT, MRI, X-ray, or ultrasound images, anonymizing DICOM files, wo
Develops, tests, and validates clinical machine learning models with the PyHealth 2.x healthcare AI toolkit. Use when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, length of stay, drug recommendation), medical coding systems (ICD
Generates concise (3-4 page), focused medical treatment plans in LaTeX/PDF format across all clinical specialties — general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management — using SMART goal framew
Verifies that every bibliography entry actually exists by cross-checking Crossref, OpenAlex, Semantic Scholar, and arXiv (no API key required) plus doi.org DOI registration, fuzzy-matching title and authors (difflib ratio >= 0.70), flagging retractions recorded by Crossref (inclu
Runs a 13-agent deep research pipeline for rigorous academic work on any topic across 7 modes (full research, quick brief, paper review, lit-review, fact-check, Socratic guided research dialogue, and systematic review with optional meta-analysis), covering research-question formu
Audits and repairs Markdown link health across a skills repo via a four-tier pipeline (config hardening, intra-repo file-ref fixes, external URL substitutions, residual exclusions) and enforces a Tier 3 substitution guardrail that prevents regressions of previously-passing links;
Drafts and revises academic papers through a 12-agent pipeline with hardened LaTeX output (apa7 class, PDF compiled from LaTeX), supporting IMRaD, literature review, theoretical, case study, policy brief, and conference paper structures, APA 7.0 (default), Chicago, MLA, IEEE, and
Orchestrates the full academic research pipeline (research, write, integrity check, review, revise, re-review, re-revise, final integrity check, finalize), coordinating alterlab-deep-research, alterlab-paper-writer, and alterlab-paper-reviewer into a seamless 10-stage workflow wi
Add remote HTTP or local stdio MCP servers to Claude Code, choose the right scope, protect credentials, verify the connection, and test with least privilege.
Skills teach Claude a repeatable method, connectors provide governed access to apps and live data, and plugins package related capabilities for installation and sharing.
Use an agent skill to package reusable know-how and workflow instructions. Use an MCP server when an agent needs live, governed access to external data or actions.
Custom commands and skills can both create a slash-invoked workflow in Claude Code. The important choice is how the workflow is discovered, shared, and permissioned.
A useful Claude skill solves one recurring engineering job, is easy to inspect, and saves more time than it creates in setup and review.
Claude skills can live in your Claude account, your local Claude Code setup, or a repository. Install them where the sessions that need them can load them.
Build a portable AI agent skill from one repeatable job: a precise description, concise instructions, focused resources, and tests that prove it works.
AI agent skills package instructions, scripts, references, and templates into portable folders an agent loads only when the task calls for them.
AI made publishing cheap, which is exactly the problem. What separates a page worth ranking from a competent summary of the first ten results.
A prompt that works once isn't a quality system. Five cases, an observable rubric, and a regression set will tell you whether a change helped.
One character of YAML, four pods that never started, and two safety nets I didn't know were holding. Every restart is an audit. Schedule them before they schedule you.
"Verify your work" isn't an instruction. It's a mood. Here's the version that's an instruction. Verify with a different mechanism than the one that made the claim.
A prompt that works once may still fail in production. A lightweight eval set gives you repeatable cases, a clear rubric, and a way to see whether a prompt change actually improved the workflow.
The best AI tool is not the one with the longest feature list. It is the one that solves a defined job reliably, fits the workflow, handles data appropriately, and remains useful after the novelty wears off.
Use AI to speed research without losing trust. Learn to find primary sources, verify claims, preserve uncertainty, and keep an auditable source trail.
Better prompts aren't magic wording. They're short briefs that hand the model a task, the context it can't infer, the limits, and a quality bar.
A green PR, a controller reporting success, and not one line of the new code running
/story-long-scan
Story long scan
长篇网文扫榜,分析起点、番茄、晋江等平台趋势。
/story-long-write
Story long write
长篇网文写作,从选题、大纲到逐章正文和持续追踪。
/story-review
Story review
多视角小说审查;ZCode 项目 agents 不可用时自动降级 solo。
/story-setup
Story setup
为当前项目部署或检查 ZCode 网文 Skills、Commands、Hooks 与 AGENTS.md。
/story-short-analyze
Story short analyze
短篇网文拆文,分析故事核、情绪线、结构和反转。
/story-short-scan
Story short scan
短篇网文扫榜,分析盐言、七猫、黑岩、点众等平台趋势。
/story-short-write
Story short write
短篇网文写作,从情绪目标、反转和小节大纲到正文。
/story
Story
网文工具箱路由入口。根据模糊意图分发到合适的网文 Skill。
/coder-eval-code-review-full
Coder eval code review full
Review the codebase across critical quality axes
/coder-eval-code-review-wf
Coder eval code review wf
Workflow-based 8-axis codebase review — per-axis sub-workflows, adversarial verify, deterministic scoring + rendering
/coder-eval-code-review
Coder eval code review
Run a multi-model code review on uncommitted changes or a described set of files
/coder-eval-create-plan
Coder eval create plan
Create a structured, phased implementation plan for a feature or change in the coder_eval codebase, executable from a fresh session by /coder-eval-implement-plan
/coder-eval-implement-plan
Coder eval implement plan
Implement an approved coder_eval plan phase by phase with risk-scaled per-phase review, then a final code review
/coder-eval-review
Coder eval review
Generate per-task review.json (summary + tags) for a completed run
/evolve
Evolve
Evolve skill files by integrating validated lessons from real usage
/init
Init
Initialize .autocontext/ in the current project for knowledge persistence
/review
Review
Interactively review and curate accumulated project lessons
/setup
Setup
First-run configuration for the autocontext plugin
/status
Status
Show knowledge stats for the current project
/event
Event
Create event materials (flyers, posters, signage) with your organization's branding
Make any song you can imagine
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