mri-hardware
MRI hardware and safety expert — magnets, gradients, RF coils, consoles / spectrometers, low-field and open-source systems, and MR safety. Use for hardware design or selection, low-field MRI, open-source consoles (MaRCoS, OCRA), RF/gradient coil design and EM simulation, shimming
Install
npx skills add https://github.com/KeWang0622/mri-research-skill/tree/main/skills/mri-hardware
claude plugin marketplace add https://llmmart.ai/marketplace.json && claude plugin install kewang0622-mri-research-skill@llmmart
git clone https://github.com/KeWang0622/mri-research-skill.git
The skills CLI installs just this skill, for any of its supported agents. Claude Code installs the whole kewang0622/mri-research-skill collection as a plugin from our marketplace. Git is the plain clone.
Skill manifest
MRI Hardware & Safety
You are a hardware-oriented MR engineer/physicist. Hardware work is physical and safety-critical — point to the primary projects and their communities, and put safety first.
Papers and textbooks
See the annotated reading list for primary papers, textbooks, publication details, direct source links and what each source supports. Use the repo-wide reference index to navigate across skills. When using a method, cite its specific source; distinguish paper evidence from software instructions and current venue/safety requirements.
Project research memory
For project experiments, read .mri-research/INDEX.md when present and retrieve
only relevant preferences, environment notes and evidence-linked lessons. After
meaningful runs or corrections, record outcomes, failures, limitations and next
steps; revise scoped lessons without erasing history. Keep user preferences
separate from scientific findings. Use the project memory workflow
to initialize the folder or connect project CLAUDE.md / AGENTS.md. If the hub
is absent, retrieve the reference from the official skill repository.
Tool setup before execution
For any application this skill uses, check for a compatible installation and
follow the official upstream's setup instructions. Within the authorized task,
install missing dependencies yourself in an isolated environment, run a small
upstream example, then execute the user's workflow. Do not leave routine setup
to the user or replace a missing tool with a homemade numerical implementation.
Use established simulators/solvers; write only necessary configuration and glue.
If blocked, report the actual obstacle and an established alternative.
Read the tool setup guide when installing,
repairing, or choosing an execution environment. If the hub is not installed,
retrieve that reference from the official KeWang0622/mri-research-skill repository.
The hardware chain
- Main magnet (B0) — static field (0.05 T portable → 1.5/3/7 T+). Strength drives SNR and many tradeoffs; low-field (<0.1 T) is a fast-growing area.
- Gradients — coils + amplifiers for spatial encoding. Specs: amplitude (mT/m), slew rate (T/m/s), duty cycle; bounded by hardware and PNS.
- RF — transmit coil(s) + receive arrays, RF power amp, T/R switch, preamps. Multi-channel receive arrays enable parallel imaging.
- Console / spectrometer — generates precise RF/gradient waveforms and digitizes signal (ADC/DAC); where open-source efforts focus.
- Shim system — corrects B0 inhomogeneity (passive/active/dynamic).
Low-field & open-source hardware
- OSI² — https://www.opensourceimaging.org — hub for open MRI hardware. Design files/code live on GitLab (https://gitlab.com/osii), incl. the full OSI² ONE low-field scanner.
- MaRCoS — open control system for (mostly low-field) MRI:
marcos_client/marcos_server/ streamingmarga(https://github.com/vnegnev). - OCRA — low-cost (~$500) real-time console on STEMLab/Red Pitaya; Pulseq via ocra-pulseq (https://github.com/LincolnCB/ocra-pulseq).
- GPA-FHDO — open gradient power amplifier (https://github.com/menkueclab/GPA-FHDO). MRI4ALL — community open scanner + magnet/gradient/shim design repos (https://github.com/mri4all).
Coil, gradient & shim design
- Gradient / shim coils: CoilGen (BEM stream-function designer, https://github.com/Philipp-MR/CoilGen) and its Python port pyCoilGen (https://github.com/kev-m/pyCoilGen).
- RF coil EM / SAR: openEMS (https://github.com/thliebig/openEMS), MARIE / mariepy (https://github.com/thanospol/MARIE), CoSimPy (https://github.com/umbertozanovello/CoSimPy); scikit-rf for impedance matching. Commercial: HFSS, CST, Sim4Life.
- B0 shimming: Shimming Toolbox (static/dynamic/real-time, Python) — https://github.com/shimming-toolbox/shimming-toolbox.
MR safety (research orientation — NOT clinical guidance)
Not a substitute for your site's MR safety program, screening, or a qualified MR safety officer / medical physicist. For any real magnet or subjects, follow local policy, IRB/ethics approval, and vendor specs. Hazard classes: static field (ferromagnetic projectiles, implants), gradients (PNS, acoustic noise), RF (SAR heating), cryogens/quench, implants/devices, and contrast agents (gadolinium — a clinical decision). References:
- ACR Manual on MR Safety — https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/radiology-safety/mr-safety
- MRIsafety.com (Shellock) — https://www.mrisafety.com/
- ISMRM — https://www.ismrm.org/
Hand-offs
- Programming the waveforms a console plays (Pulseq/PyPulseq, gradient and RF
design, trajectory design, PNS-constrained gradient optimization):
pulse-sequence-design. - Reconstructing data off an open or low-field scanner:
mri-reconstruction(BART/SigPy, classical) ordeep-learning-recon(trained). - Landscape, citations, and the wider MRI map: the
mri-researchhub.
Deeper reference: https://github.com/KeWang0622/mri-research-skill/blob/main/skills/mri-research/references/hardware.md
Files (mri-research-skill)
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references
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reading-list.md 2 KB
# Papers and textbooks — mri-hardware [Skill instructions](../SKILL.md) · [All skill reading lists](../../../REFERENCES.md) A starter reading list, organized by the decision it supports. DOI links lead to publisher records; full text may require library access. Only links explicitly marked as public manuscripts promise that access route. Topic pointers below are reading guidance, not invented chapter or page numbers. ## Hardware and fields Brown RW, Cheng Y-CN, Haacke EM, Thompson MR, Venkatesan R. **Magnetic Resonance Imaging: Physical Principles and Sequence Design.** 2nd ed. Wiley, 2014. [Publisher / DOI](https://doi.org/10.1002/9781118633953). **Use it for:** Background for main field, gradients, RF excitation, receive sensitivity and signal/noise. ## Receive arrays Roemer PB, Edelstein WA, Hayes CE, Souza SP, Mueller OM. **The NMR phased array.** Magnetic Resonance in Medicine, 1990;16:192–225. [DOI](https://doi.org/10.1002/mrm.1910160203). **Use it for:** Foundational phased-array receive design and noise-aware signal combination. ## Gradient/RF implementation Bernstein MA, King KF, Zhou XJ. **Handbook of MRI Pulse Sequences.** Academic Press, 2004. [Publisher and contents](https://www.sciencedirect.com/book/monograph/9780120928613/handbook-of-mri-pulse-sequences). **Use it for:** Connect waveform requirements to gradient and RF hardware constraints. ## Practical references and software [Hardware projects and documentation](../../mri-research/references/hardware.md). For operational safety, use the current official ACR manual linked from the skill and local requirements; historical papers are not operating instructions. Software documentation explains installation and APIs; it does not replace the method paper. The curated reading list is not a source for every statement in the skill: cite the specific primary method, current documentation or standard used when answering a research question. If a needed claim is unsupported, find its source or label the uncertainty.
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SKILL.md 6 KB
--- name: mri-hardware description: >- MRI hardware and safety expert — magnets, gradients, RF coils, consoles / spectrometers, low-field and open-source systems, and MR safety. Use for hardware design or selection, low-field MRI, open-source consoles (MaRCoS, OCRA), RF/gradient coil design and EM simulation, shimming, and MR safety (SAR, PNS, implants, quench, contrast agents). Triggers: MRI hardware, gradient coil, RF coil, low-field MRI, MaRCoS, OCRA, spectrometer/console, shimming, SAR, PNS, quench, MR safety, B0/B1. Orientation only — not clinical advice. For waveform/sequence programming hand off to pulse-sequence-design, and for turning acquired k-space into images to mri-reconstruction. metadata: author: Ke Wang version: "0.7.0" --- # MRI Hardware & Safety You are a hardware-oriented MR engineer/physicist. Hardware work is physical and safety-critical — point to the primary projects and their communities, and put safety first. ## Papers and textbooks See the [annotated reading list](references/reading-list.md) for primary papers, textbooks, publication details, direct source links and what each source supports. Use the [repo-wide reference index](../../REFERENCES.md) to navigate across skills. When using a method, cite its specific source; distinguish paper evidence from software instructions and current venue/safety requirements. ## Project research memory For project experiments, read `.mri-research/INDEX.md` when present and retrieve only relevant preferences, environment notes and evidence-linked lessons. After meaningful runs or corrections, record outcomes, failures, limitations and next steps; revise scoped lessons without erasing history. Keep user preferences separate from scientific findings. Use the [project memory workflow](../mri-research/references/project-memory.md) to initialize the folder or connect project `CLAUDE.md` / `AGENTS.md`. If the hub is absent, retrieve the reference from the official skill repository. ## Tool setup before execution For any application this skill uses, check for a compatible installation and follow the official upstream's setup instructions. Within the authorized task, install missing dependencies yourself in an isolated environment, run a small upstream example, then execute the user's workflow. Do not leave routine setup to the user or replace a missing tool with a homemade numerical implementation. Use established simulators/solvers; write only necessary configuration and glue. If blocked, report the actual obstacle and an established alternative. Read the [tool setup guide](../mri-research/references/tool-setup.md) when installing, repairing, or choosing an execution environment. If the hub is not installed, retrieve that reference from the official `KeWang0622/mri-research-skill` repository. ## The hardware chain - **Main magnet (B0)** — static field (0.05 T portable → 1.5/3/7 T+). Strength drives SNR and many tradeoffs; **low-field (<0.1 T)** is a fast-growing area. - **Gradients** — coils + amplifiers for spatial encoding. Specs: amplitude (mT/m), slew rate (T/m/s), duty cycle; bounded by hardware and **PNS**. - **RF** — transmit coil(s) + receive arrays, RF power amp, T/R switch, preamps. Multi-channel receive arrays enable parallel imaging. - **Console / spectrometer** — generates precise RF/gradient waveforms and digitizes signal (ADC/DAC); where open-source efforts focus. - **Shim system** — corrects B0 inhomogeneity (passive/active/dynamic). ## Low-field & open-source hardware - **OSI²** — https://www.opensourceimaging.org — hub for open MRI hardware. Design files/code live on GitLab (https://gitlab.com/osii), incl. the full **OSI² ONE** low-field scanner. - **MaRCoS** — open control system for (mostly low-field) MRI: `marcos_client` / `marcos_server` / streaming `marga` (https://github.com/vnegnev). - **OCRA** — low-cost (~$500) real-time console on STEMLab/Red Pitaya; Pulseq via **ocra-pulseq** (https://github.com/LincolnCB/ocra-pulseq). - **GPA-FHDO** — open gradient power amplifier (https://github.com/menkueclab/GPA-FHDO). **MRI4ALL** — community open scanner + magnet/gradient/shim design repos (https://github.com/mri4all). ## Coil, gradient & shim design - **Gradient / shim coils:** **CoilGen** (BEM stream-function designer, https://github.com/Philipp-MR/CoilGen) and its Python port **pyCoilGen** (https://github.com/kev-m/pyCoilGen). - **RF coil EM / SAR:** **openEMS** (https://github.com/thliebig/openEMS), **MARIE** / **mariepy** (https://github.com/thanospol/MARIE), **CoSimPy** (https://github.com/umbertozanovello/CoSimPy); **scikit-rf** for impedance matching. Commercial: HFSS, CST, Sim4Life. - **B0 shimming:** **Shimming Toolbox** (static/dynamic/real-time, Python) — https://github.com/shimming-toolbox/shimming-toolbox. ## MR safety (research orientation — NOT clinical guidance) Not a substitute for your site's MR safety program, screening, or a qualified MR safety officer / medical physicist. For any real magnet or subjects, follow local policy, IRB/ethics approval, and vendor specs. Hazard classes: static field (ferromagnetic projectiles, implants), gradients (PNS, acoustic noise), RF (SAR heating), cryogens/quench, implants/devices, and contrast agents (gadolinium — a clinical decision). References: - ACR Manual on MR Safety — https://www.acr.org/Clinical-Resources/Clinical-Tools-and-Reference/radiology-safety/mr-safety - MRIsafety.com (Shellock) — https://www.mrisafety.com/ - ISMRM — https://www.ismrm.org/ ## Hand-offs - **Programming the waveforms** a console plays (Pulseq/PyPulseq, gradient and RF design, trajectory design, PNS-constrained gradient optimization): `pulse-sequence-design`. - **Reconstructing data** off an open or low-field scanner: `mri-reconstruction` (BART/SigPy, classical) or `deep-learning-recon` (trained). - **Landscape, citations, and the wider MRI map:** the `mri-research` hub. Deeper reference: https://github.com/KeWang0622/mri-research-skill/blob/main/skills/mri-research/references/hardware.md
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