LLM Mart Basic
@llm-mart · Joined Jun 2026
Query NCBI ClinVar via the E-utilities API or FTP for the clinical significance (pathogenicity) of human germline genetic variants, searching by gene, variant, condition, or genomic position and interpreting ACMG/AMP classifications and review-status star ratings. Use when assess
Access the COSMIC catalogue of somatic mutations in cancer to query somatic mutations, the Cancer Gene Census, mutational signatures, and gene fusions (authentication required). Use when curating known cancer driver genes, looking up recurrent somatic mutations in a gene, or inte
Use when conducting security assessments — OWASP Top 10 / API / LLM, CWE Top 25, CVSS scoring — auditing PHP/TYPO3, APIs, frontend, Terraform/K8s/Docker IaC, AWS cloud, AI agent configs, or scanning dependencies.
Look up and apply Python builtin and standard-library time and space complexity when analyzing code, reviewing performance, or comparing operations. Includes implementation and version qualifications. Use for complexity analysis, not general Python syntax questions.
Designs and reviews tests for every complexity, behavioral, and performance claim in documentation. Use when adding or changing claims, auditing claim or API coverage, or creating module complexity tests.
Updates this repository's supported Python range when an old version reaches EOL or a new final version is released. Covers package metadata, CI pins, version references, documentation, translations, public API manifests, tests, and lockfile verification.
Run a user-authored playbook from the vault: a multi-step guided procedure. Lists available global and local playbooks, selects one by trigger, and drives its steps in order — spawning per-step sub-agents or running inline, pausing at review gates.
Cut a booping plugin release — verify the version bump against the last published tag, draft public-voiced release notes, merge the release branch into master, tag, and publish the GitHub release. Use when cutting a vX.Y.Z release of this repo.
Six hours in, one step left, everything green, and the incident that didn't happen
CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.
Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it
An API request routing a model's tool call through an approval gate to a remote MCP server
31 config keys, two audits, and why the first one was wrong in both directions
The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.
Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.
Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.
"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks
stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.
The most important rule wasn't about what I could change. It was about what I was allowed to display.
Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.
Use MCP Inspector to connect to local or remote servers, inspect capabilities, call tools, read resources, test prompts, and diagnose failures before release.
Build an MCP server in TypeScript with focused tools, validated schemas, local and remote transports, Inspector tests, and production security controls.
An MCP server exposes tools, resources, or prompts through a standard protocol so an AI application can discover and use external capabilities.
Treat an AI agent skill as both an instruction package and a software dependency: inspect what it says, what it runs, what it can access, and how it updates.
Add remote HTTP or local stdio MCP servers to Claude Code, choose the right scope, protect credentials, verify the connection, and test with least privilege.
Skills teach Claude a repeatable method, connectors provide governed access to apps and live data, and plugins package related capabilities for installation and sharing.
Use an agent skill to package reusable know-how and workflow instructions. Use an MCP server when an agent needs live, governed access to external data or actions.
Custom commands and skills can both create a slash-invoked workflow in Claude Code. The important choice is how the workflow is discovered, shared, and permissioned.
/gaia-forensics
gaia-forensics
Turn a GAIA workflow misfire into a redacted, classified, filing-ready bug report in one read-only pass. Self-diagnoses config issues inline; files probable bugs upstream on confirmation.
/gaia-harden
gaia-harden
Judge-the-form, human-gated hardening. Reviews recurring code-audit-frontend findings and, with approval, drafts the lowest-context-weight form (deterministic check / skill / path-scoped prose rule) into the working tree. Pass `list` to see live candidates or `why <finding_class>` to explain one.
/gaia-init
gaia-init
Initialize a new project from the GAIA React template, renames, strips GAIA branding, configures i18n, installs Claude skills/plugins.
/gaia-plan
gaia-plan
Plan a complex feature using GAIA's task-orchestration pattern, structures the work into fresh-context subagent phases for your approval. Does not implement.
/gaia-release
gaia-release
Cut a new GAIA release, bump version, graduate CHANGELOG, regenerate manifest, open release PR, then tag on merge. Maintainer-only.
/gaia-serena-sync
gaia-serena-sync
Detect and, on explicit consent, additively append the languages Serena is not indexing to the `languages:` list in `.serena/project.yml`, then prompt a Serena restart. Never mutates without a yes; inert without Serena.
/gaia-spec
gaia-spec
Author an immutable SPEC artifact through Socratic discovery (spec-kit wrapper), then STOP. Terminal, never runs /gaia-plan; it prints a /gaia-plan prompt the human pastes into a fresh session. Pass `auto <description>` for non-interactive mode that answers its own questions.
/health-audit
health-audit
Maintainer-only autonomous health audit + auto-heal loop. Runs N=3 fresh-team audit-fix-audit cycles with circuit breakers, reports an F-to-A+ verdict (folding in the shared Claude-integration fitness grade) or escalates.
/setup-gaia
setup-gaia
Single post-init onboarding command; detects situation, runs only owed phases; safe to re-run. --reconfigure rotates token and re-selects tools.
/constitution-check
Constitution check
GAIA before_specify hook: constitution placeholder check + spec-kit version-pin drift detection.
/lint
Lint
GAIA after_specify hook: immutability lint over the just-written SPEC artifact.
/plan-close
speckit-gaia-plan-close
Close a plan after implementation+merge. Offers wiki-promote for the plan's consolidated SUMMARY.md, cold-consolidates an out-of-band merge, then early-reaps the local plan folder once cost is represented in cost.jsonl.
/self-review
Self review
GAIA self-review: pre-gate-2 review pass on the in-progress SPEC draft.
/spec-close
speckit-gaia-spec-close
Close a SPEC after implementation+merge. Optional drain of deferred wiki-promote, cold-consolidates an out-of-band merge into SUMMARY.md, then early-reaps the local SPEC folder once cost is represented in cost.jsonl.
/spec
Spec
GAIA Socratic discovery wrapper: /speckit-specify for the initial draft, then GAIA's own Socratic clarify loop.
/uat-write
Uat write
GAIA before_implement hook: render PO-authored UATs into Playwright e2e specs at .playwright/e2e/spec-NNN/.
/wiki-promote
speckit-gaia-wiki-promote
Promote merged SPEC or plan content into the GAIA wiki.
/speckit.clarify
Speckit.clarify
This project uses the GAIA preset. Bare `/speckit-clarify` is not the clarify path here: core clarify writes an off-shape artifact (a `## Clarifications` / `### Session` block with five-word answers) and carries a question cap GAIA does not use. Run `/gaia-spec` instead — it driv
/speckit.specify
Speckit.specify
GAIA-wrapped /speckit-specify: writes through core, then relocates the artifact to .gaia/local/specs/SPEC-NNN/SPEC.md and stamps GAIA frontmatter.
/impact-statusline
Impact statusline
Show or configure the compact Fallow Impact statusline in Claude Code
Make any song you can imagine
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