LLM Mart Basic

Search and explore ENCODE Project genomics data. Use when the user wants to find experiments, files, or explore what data is available for specific assays, organs, cell lines, or targets.

Set up the ENCODE Toolkit server connection. Use when the user needs help installing, configuring, or troubleshooting the ENCODE connector.

Find and work with ENCODE single-cell genomics data including scRNA-seq and scATAC-seq. Use when the user asks about single-cell experiments, cell type resolution, clustering from ENCODE data, deconvolution of bulk signals using single-cell references, or comparing single-cell vs

Track ENCODE experiments locally with publications, citations, and provenance. Use when the user wants to build a collection of experiments, manage citations, compare experiments, or track data provenance.

Query the UCSC Genome Browser REST API to retrieve regulatory tracks, DNA sequences, cCRE annotations, TF binding clusters, and track schemas for any genomic region. Use when the user wants to look up what regulatory elements exist at a genomic locus, retrieve DNA sequence under

Annotate genetic variants (GWAS hits, eQTLs, rare variants) with ENCODE functional data to interpret non-coding variation. Use when the user has variants of interest and wants to understand their regulatory context, identify causal variants from GWAS loci, assess variant impact o

Comprehensive guide for visualizing ENCODE data including deeptools heatmaps, IGV screenshots, UCSC track hubs, and publication-quality plots. Use when users need to create visualizations of ChIP-seq signal, peak landscapes, genome browser views, or any visual representation of E

Make software health, failure, degradation, and recovery visible through useful observability and diagnostics. Use when adding logs, metrics, traces, health checks, alerts, incident signals, or operational feedback.

Inspect the real repository, environment, dependencies, and runtime evidence before designing or changing software. Use for greenfield construction, unfamiliar codebases, uncertain behavior, or any task where assumptions could create rework.

Reflect on failures, incidents, reviews, and completed software work to turn evidence into durable tests, guardrails, documentation, and process improvements.

Debug software by making failures visible, reproducing them, finding contributing causes, and adding durable regression protection. Use for bugs, failing tests, incidents, regressions, flaky behavior, and unexplained production errors.

Improve software continuously through small, safe, behavior-preserving changes that reduce maintenance cost. Use for refactoring, cleanup, technical debt, naming, duplication, dead code, or post-change polish.

Choose simple, maintainable software designs by removing speculative complexity, comparing alternatives, and making explicit tradeoffs. Use for architecture, API, data-model, dependency, and scope decisions.

Implement software through small, repeatable, integrated vertical slices with clear exit criteria and honest verification. Use when a design is understood and code needs to be built or changed.

Review software with careful attention to correctness, maintainability, security, operations, and meaningful detail. Use for diffs, branches, pull requests, architecture decisions, or final quality checks.

Author a greenfield build blueprint in four gated stages — business logic, tech stack, logic-to-stack mapping, and a phase plan — each requiring explicit user approval before the next. Use when building a new project or a substantial new subsystem from scratch.

Step 0 of consequential software work under Monozukuri. Classify the task, assess its risk tier, choose execute or sensei mode, and compose the sequence of Monozukuri skills and the Definition of Done for it. Skip for trivial one-line edits, pure questions, and throwaway scripts.

Clarify software goals, constraints, stakeholders, and risks before consequential design or implementation work. Use for greenfield ideas, ambiguous requirements, architecture decisions, or changes where misunderstanding would be costly.

Prevent software mistakes through strong boundaries, safe defaults, meaningful tests, and mechanically enforced invariants. Use for TDD, validation, schemas, authorization, edge cases, regression coverage, or reliability-sensitive behavior.

Prepare software for responsible release, migration, deployment, rollback, and handoff with evidence about compatibility, health, ownership, and recovery.

A surprising share of AI-in-the-terminal failures aren't the AI. They're zsh, and a version of bash from 2006.

A Claude Code plugin turns standalone project configuration into a namespaced, installable extension that teams and communities can update as one unit.

None of the safety came from the model. It came from six boring habits.

Skills package instructions and references. Subagents run work in a separate context and return results. They solve different problems and can be composed deliberately.

Six hours in, one step left, everything green, and the incident that didn't happen

CLAUDE.md carries persistent project context. Skills load reusable procedures when relevant. Separating stable facts from task-specific workflows keeps both easier to maintain.

Twenty minutes recovering secrets that never existed, and the one sentence from a human that ended it

An API request routing a model's tool call through an approval gate to a remote MCP server

31 config keys, two audits, and why the first one was wrong in both directions

The official MCP Registry stores standardized server metadata rather than package code. Publishers verify a namespace, describe installation or remote access, and submit immutable versions.

Everyone looks at the Dockerfile. The file that actually leaked the key was the project file.

Remote MCP authorization uses established OAuth standards, but secure integration still requires issuer validation, least-privilege scopes, protected token handling, and server-side enforcement.

"Copy it over and switch the reference" is two steps, and the outage lives in the one nobody checks

stdio fits local processes and prototypes. Streamable HTTP fits hosted services and shared integrations. The right choice follows where the capability runs and who must reach it.

The most important rule wasn't about what I could change. It was about what I was allowed to display.

Tools perform operations, resources expose readable context, and prompts provide reusable templates. Choosing the correct primitive makes an MCP server easier to understand and govern.

Use MCP Inspector to connect to local or remote servers, inspect capabilities, call tools, read resources, test prompts, and diagnose failures before release.

Build an MCP server in TypeScript with focused tools, validated schemas, local and remote transports, Inspector tests, and production security controls.

An MCP server exposes tools, resources, or prompts through a standard protocol so an AI application can discover and use external capabilities.

Treat an AI agent skill as both an instruction package and a software dependency: inspect what it says, what it runs, what it can access, and how it updates.

Run autonomous hunt loop on a target — scope check → recon → rank surface → hunt → validate → report with configurable checkpoints. Usage: /autopilot target.com [--paranoid|--normal|--yolo]

Build an exploit chain — given bug A, finds B and C to combine for higher severity and payout. Knows common chain patterns: IDOR→ATO, SSRF→cloud metadata, XSS→ATO, open redirect→OAuth theft, S3→bundle→secret→OAuth. Usage: /chain

Active vulnerability hunting. Two-track dispatcher — asks Red Team vs WAPT, hands off to hunt-dispatch skill and sibling commands. Usage: /hunt target.com | /hunt *.target.com | /hunt targets.txt [--vuln-class X] [--source-code P] [--chrome]

On-demand intelligence fetch for a target — CVEs, disclosed reports, new features. Pulls NVD/GitHub-Advisory CVEs + bundled disclosed reports + hunt memory context. Usage: /intel target.com

Inspect or rotate the autopilot ledger JSONL files (findings.jsonl, negatives.jsonl). Caps file size and keeps N rotated backups so memory does not grow unbounded.

Pick up a previous hunt on a target — shows hunt history and untested surface from the autopilot ledger. Usage: /pickup target.com

Run full recon pipeline on a target — subdomain enum (Chaos API + subfinder), live host discovery (dnsx + httpx), URL crawl (katana + waybackurls + gau), gf pattern classification, nuclei scan. Outputs to recon/<target>/ directory. Usage: /recon target.com

Optional manual note on a target or the last confirmed finding. Capture is automatic during autopilot; this is for extra context. Usage: /remember

Write a submission-ready bug bounty report. Generates H1/Bugcrowd/Intigriti/Immunefi format with CVSS 3.1 score, proof of concept, impact statement, and remediation. Run /validate first. Usage: /report

Mandatory pre-flight scope check — verify an asset is in scope BEFORE any HTTP touch. Deterministic (deny-wins, default-deny) via engine/scope.py against the engagement's scope.md. Blocks out-of-scope testing. Usage: /scope <asset> [<asset> ...]

Show ranked attack surface for a target from its recon manifest + hunt memory. Deterministic backing is `cbh surface <target>` (reads recon/<target>/manifest.json); LLM layer adds ledger signal. Usage: /surface target.com

Meme coin and token security scan — checks for rug pull vectors (hidden mint, honeypot, fee manipulation, LP lock bypass, authority retention, bonding curve exploits, fake renounce, sandwich amplification). Manual 8-class grep audit (with an optional automated scanner if present). Usage: /token-scan <contract_path_or_dir> [--chain solana]

Quick 7-Question Gate triage on a finding before writing a report. Kills N/A submissions before they happen. Faster than /validate — for quick go/no-go decisions. Usage: /triage

Validate a finding — runs 7-Question Gate + 4-gate checklist. Kills weak findings before report writing. Prevents N/A submissions that hurt validity ratio. Usage: /validate

Smart contract security audit — runs through 10 bug class checklist (accounting desync, access control, incomplete path, off-by-one, oracle errors, ERC4626, reentrancy, flash loan, signature replay, proxy/upgrade). Applies pre-dive kill signals first. Generates Foundry PoC template for confirmed findings. Usage: /web3-audit <contract.sol>

Crabbox is a single CLI (`crabbox`). Commands are top-level, not nested under a

`crabbox actions` prepares a leased box from your repository's own GitHub

See [Runtime adapter stack](../features/runtime-adapter-stack.md) for the

`crabbox admin` groups trusted operator controls for coordinator-backed leases and the cloud resources behind them. Use it to inspect every lease the broker tracks, reconcile expired leases against live cloud state, force-release or delete a backing server, print provider IAM pol

`crabbox artifacts` turns a desktop lease into durable QA evidence: it collects

Paper trading simulator for Polymarket — built for AI agents. MCP server, live order books, strategy backtesting. Install: npx clawhub install polymarket-paper-…

An SSH tool dedicated to addressing all pain points · (macOS/Windows/Linux/Android/iOS)

The first AI agent harness native to the browser. A browser extension that runs a full agent loop where you already work: it drives your tabs, spins up sandboxe…

SmartLabel AI 2026: Auto-Annotate Any Object via LLM-Powered Prompt Parsing

Local-first visual generation runtime and studio for people and coding agents, with reproducible image and video workflows across multiple providers.

Scholar All-In-One: A research infrastructure for AI agents

Give your AI agent a real browser — with a human in the loop. Open-source MCP-native browser agent.

同花顺免费开源AI插件FQGate-agent（原插件名 tonghuasun-agent）：为 Codex、Claude Code、DeepSeek 等 AI 工具提供本机 A 股实时行情、K 线、Level-2、资讯、账户查询与可选交易能力。

A non-linear AI agent workbench — session is a tree: branch anytime, and context follows the branch

Production-grade AutoCAD MCP server for AI agents — 122 tools, dual COM (live AutoCAD) + headless ezdxf engines, ISO GD&T and dimension-tolerance validation for…

A DeepSeek coding agent harness: persistent shell, Ultra subagents, auto approval, Chrome MCP and session telemetry

Waku Waku! Waku Agent is a local-first AI agent harness you actually own, including loop, memory, eval, all in code built to stay legible as it grows.

Remote control for Claude Code, Codex, Grok, and Cursor on Mac or PC. View sessions, send tasks, and drive them remotely from your phone, PIN, or Ring. OpenClaw…