LLM Mart Basic
@llm-mart · Joined Jun 2026
Queries the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biomedical relationships across genes, drugs, diseases, phenotypes, pathways, and biological processes. Use when exploring drug-disease or gene-disease links, building disease-centric knowledge subgraphs, or
Loads Therapeutics Data Commons (TDC, PyTDC) AI-ready drug-discovery datasets and benchmarks — ADME, toxicity, drug-target interaction (DTI), scaffold splits, and molecular oracles for therapeutic ML and pharmacological prediction. Use when fetching a standardized benchmark datas
Provides the RDKit cheminformatics toolkit for low-level, fine-grained molecular primitives — SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure/SMARTS search, 2D/3D coordinate generation, similarity, and reaction handling. Use when custom sanitization,
Drives the Rowan cloud quantum-chemistry platform via its Python API for computational chemistry — pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2), wi
Builds PyTorch-native graph neural networks with TorchDrug for molecules and proteins, exposing custom GNN architectures, task/dataset abstractions, molecular generation, retrosynthesis planning, and knowledge-graph reasoning. Use when a project specifically needs TorchDrug's dat
Generates professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings — biomarker-stratified patient cohort analyses with outcomes and evidence-based treatment recommendation reports with decision algorithms, supporting GRADE evidence
Prepares ISO 13485 certification documentation for medical device Quality Management Systems (QMS) — gap analysis of existing documentation, Quality Manuals, required procedures and work instructions, and Medical Device Files. Use for ISO 13485 QMS documentation, conducting a doc
Processes and analyzes physiological biosignals with the NeuroKit2 Python toolkit — ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements, or when
Reads, writes, and manipulates DICOM (Digital Imaging and Communications in Medicine) medical imaging files with the pydicom Python library. Use when reading/writing/modifying DICOM data, extracting pixel data from CT, MRI, X-ray, or ultrasound images, anonymizing DICOM files, wo
Develops, tests, and validates clinical machine learning models with the PyHealth 2.x healthcare AI toolkit. Use when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, length of stay, drug recommendation), medical coding systems (ICD
Generates concise (3-4 page), focused medical treatment plans in LaTeX/PDF format across all clinical specialties — general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management — using SMART goal framew
Verifies that every bibliography entry actually exists by cross-checking Crossref, OpenAlex, Semantic Scholar, and arXiv (no API key required) plus doi.org DOI registration, fuzzy-matching title and authors (difflib ratio >= 0.70), flagging retractions recorded by Crossref (inclu
Runs a 13-agent deep research pipeline for rigorous academic work on any topic across 7 modes (full research, quick brief, paper review, lit-review, fact-check, Socratic guided research dialogue, and systematic review with optional meta-analysis), covering research-question formu
Audits and repairs Markdown link health across a skills repo via a four-tier pipeline (config hardening, intra-repo file-ref fixes, external URL substitutions, residual exclusions) and enforces a Tier 3 substitution guardrail that prevents regressions of previously-passing links;
Drafts and revises academic papers through a 12-agent pipeline with hardened LaTeX output (apa7 class, PDF compiled from LaTeX), supporting IMRaD, literature review, theoretical, case study, policy brief, and conference paper structures, APA 7.0 (default), Chicago, MLA, IEEE, and
Orchestrates the full academic research pipeline (research, write, integrity check, review, revise, re-review, re-revise, final integrity check, finalize), coordinating alterlab-deep-research, alterlab-paper-writer, and alterlab-paper-reviewer into a seamless 10-stage workflow wi
The AlterLab front door and multi-agent launcher — routes a task to the right AlterLab skill(s) when the user invokes the suite without naming one, and for a multi-stage goal (or on the keyword 'alterflow', aliases 'alterresearch' / 'ultralab') it clarifies the goal with a few qu
Designs courses and teaching materials using backward design (Wiggins & McTighe), constructive alignment (Biggs), and Bloom's taxonomy alignment, generating rubrics, formative and summative assessments, syllabi, lesson plans, inclusive-pedagogy guidance, and online/hybrid course
Supervises theses and dissertations end to end — structure guidance from proposal through defense, chapter-by-chapter writing support (introduction, literature review, methodology, results, discussion), supervision strategies, committee management, defense and viva voce preparati
Composes existing AlterLab skills into multi-agent agentic workflows using current Claude Code orchestration primitives — subagents (including nested subagents), dynamic workflow scripts, agent teams, forks, and the Claude Agent SDK: parallel fan-out, sequential pipelines, judge
/plugin-review
plugin-review
"Tiered plugin quality review: branch (quick gates),
/promote-discussions
promote-discussions
Check GitHub Discussions for highly voted learnings and promote them to Issues.
/rules-eval
rules-eval
Evaluate Claude Code rules in .claude/rules/ directories for quality
/skills-eval
skills-eval
Audit skill quality, frontmatter compliance, token efficiency, and activation reliability. Recommends improvements.
/test-skill
test-skill
Test Claude Code skills using RED/GREEN/REFACTOR TDD phases in fresh subagents to prevent priming bias.
/validate-hook
validate-hook
Validate hooks for security, performance, and SDK compliance
/validate-plugin
validate-plugin
Validate plugin structure, schema, and naming. Use for plugin creation, debugging, or verification.
/arch-init
arch-init
Initialize projects with architecture-aware templates using paradigm research and selection guidance for the target domain.
/blueprint
blueprint
Generate an implementation plan with system architecture design and dependency-ordered task breakdown from a specification.
/brainstorm
brainstorm
Guide project ideation through Socratic questioning to generate briefs with validated approaches and decision rationale.
/execute
execute
Execute implementation plan systematically with progress tracking and checkpoint validation
/mission
mission
Run full attune lifecycle as a mission with state detection and phase routing
/project-init
project-init
Initialize a new project with git setup, CI/CD workflows, pre-commit hooks, Makefiles, and language-specific tooling.
/skill-library
skill-library
Build a project skill library under .claude/skills/ as a resumable mission: discover, author in parallel, review adversarially.
/specify
specify
Create specs from project briefs with acceptance criteria and testable requirements
/upgrade-project
upgrade-project
Update existing project configurations to current best practices with selective component upgrades
/validate
validate
Validate project structure and configurations against best practices with detailed issue reporting
/war-room
war-room
Convene a multi-LLM expert panel to pressure-test strategic decisions with adversarial review and reversibility assessment.
/visualize
visualize
Generate visual diagrams of codebase structure using Mermaid Chart MCP rendering.
/ai-hygiene-audit
ai-hygiene-audit
Audit codebase for AI-generated code quality issues (vibe coding, Tab bloat, slop)
Make any song you can imagine
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