LLM Mart Basic
@llm-mart · Joined Jun 2026
Queries the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biomedical relationships across genes, drugs, diseases, phenotypes, pathways, and biological processes. Use when exploring drug-disease or gene-disease links, building disease-centric knowledge subgraphs, or
Loads Therapeutics Data Commons (TDC, PyTDC) AI-ready drug-discovery datasets and benchmarks — ADME, toxicity, drug-target interaction (DTI), scaffold splits, and molecular oracles for therapeutic ML and pharmacological prediction. Use when fetching a standardized benchmark datas
Provides the RDKit cheminformatics toolkit for low-level, fine-grained molecular primitives — SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure/SMARTS search, 2D/3D coordinate generation, similarity, and reaction handling. Use when custom sanitization,
Drives the Rowan cloud quantum-chemistry platform via its Python API for computational chemistry — pKa prediction, geometry optimization, conformer searching, molecular property calculations, protein-ligand docking (AutoDock Vina), and AI protein cofolding (Chai-1, Boltz-1/2), wi
Builds PyTorch-native graph neural networks with TorchDrug for molecules and proteins, exposing custom GNN architectures, task/dataset abstractions, molecular generation, retrosynthesis planning, and knowledge-graph reasoning. Use when a project specifically needs TorchDrug's dat
Generates professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings — biomarker-stratified patient cohort analyses with outcomes and evidence-based treatment recommendation reports with decision algorithms, supporting GRADE evidence
Prepares ISO 13485 certification documentation for medical device Quality Management Systems (QMS) — gap analysis of existing documentation, Quality Manuals, required procedures and work instructions, and Medical Device Files. Use for ISO 13485 QMS documentation, conducting a doc
Processes and analyzes physiological biosignals with the NeuroKit2 Python toolkit — ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use when processing cardiovascular signals, brain activity, electrodermal responses, respiratory patterns, muscle activity, or eye movements, or when
Reads, writes, and manipulates DICOM (Digital Imaging and Communications in Medicine) medical imaging files with the pydicom Python library. Use when reading/writing/modifying DICOM data, extracting pixel data from CT, MRI, X-ray, or ultrasound images, anonymizing DICOM files, wo
Develops, tests, and validates clinical machine learning models with the PyHealth 2.x healthcare AI toolkit. Use when working with electronic health records (EHR), clinical prediction tasks (mortality, readmission, length of stay, drug recommendation), medical coding systems (ICD
Generates concise (3-4 page), focused medical treatment plans in LaTeX/PDF format across all clinical specialties — general medical treatment, rehabilitation therapy, mental health care, chronic disease management, perioperative care, and pain management — using SMART goal framew
Verifies that every bibliography entry actually exists by cross-checking Crossref, OpenAlex, Semantic Scholar, and arXiv (no API key required) plus doi.org DOI registration, fuzzy-matching title and authors (difflib ratio >= 0.70), flagging retractions recorded by Crossref (inclu
Runs a 13-agent deep research pipeline for rigorous academic work on any topic across 7 modes (full research, quick brief, paper review, lit-review, fact-check, Socratic guided research dialogue, and systematic review with optional meta-analysis), covering research-question formu
Audits and repairs Markdown link health across a skills repo via a four-tier pipeline (config hardening, intra-repo file-ref fixes, external URL substitutions, residual exclusions) and enforces a Tier 3 substitution guardrail that prevents regressions of previously-passing links;
Drafts and revises academic papers through a 12-agent pipeline with hardened LaTeX output (apa7 class, PDF compiled from LaTeX), supporting IMRaD, literature review, theoretical, case study, policy brief, and conference paper structures, APA 7.0 (default), Chicago, MLA, IEEE, and
Orchestrates the full academic research pipeline (research, write, integrity check, review, revise, re-review, re-revise, final integrity check, finalize), coordinating alterlab-deep-research, alterlab-paper-writer, and alterlab-paper-reviewer into a seamless 10-stage workflow wi
The AlterLab front door and multi-agent launcher — routes a task to the right AlterLab skill(s) when the user invokes the suite without naming one, and for a multi-stage goal (or on the keyword 'alterflow', aliases 'alterresearch' / 'ultralab') it clarifies the goal with a few qu
Designs courses and teaching materials using backward design (Wiggins & McTighe), constructive alignment (Biggs), and Bloom's taxonomy alignment, generating rubrics, formative and summative assessments, syllabi, lesson plans, inclusive-pedagogy guidance, and online/hybrid course
Supervises theses and dissertations end to end — structure guidance from proposal through defense, chapter-by-chapter writing support (introduction, literature review, methodology, results, discussion), supervision strategies, committee management, defense and viva voce preparati
Composes existing AlterLab skills into multi-agent agentic workflows using current Claude Code orchestration primitives — subagents (including nested subagents), dynamic workflow scripts, agent teams, forks, and the Claude Agent SDK: parallel fan-out, sequential pipelines, judge
/requirements
Requirements
Generate requirements from goal and research
/research
Research
Run or re-run research phase for current spec
/start
Start
Smart entry point that detects if you need a new spec or should resume existing
/status
Status
Show all specs and their current status
/switch
Switch
Switch active spec
/tasks
Tasks
Generate implementation tasks from design
/triage
Triage
Decompose a large feature into multiple dependency-aware specs (epic triage)
/tree-ring-update
Tree ring update
Check for or install a verified Tree Ring Memory CLI update without changing installation scope
/README
README
This directory contains the command implementations for the fast-agent CLI.
/close
Close
They operate it without you.
/outcome
Outcome
Promised, measured, accepted. A number nobody signed is claimed, not delivered.
/prep
Prep
Prepare the meeting. One page from the record.
/receipts
Receipts
Find the receipt. A dated line, or it did not happen.
/trust
Trust
Diagnose trust. Process gap, or they stopped trusting you.
/awesome-docs
awesome-docs
Generate, convert, and maintain animated GitHub-safe Markdown documents with animated SVG diagrams. Covers four SVG patterns (architecture flow, lifecycle loop, field carousel, timeline phases), guided interview for any doc type (README, architecture guide, runbook, API reference, tutorial, RFC, post-mortem, how-it-works, or custom), converting existing plain Markdown, diffing for stale diagrams, quality auditing, local preview, and multi-platform export. Use when asked to "create a README for X", "write an architecture doc", "animate this guide", "convert my doc to animated", "check if my diagrams are stale", or "export my doc for Confluence".
/aws-profile
aws-profile
AWS profile management for MCP servers — discover profiles across SSO, Granted, and assumed-role chains, check credential TTL, switch profiles across VS Code and Claude Code MCP configs, and scan AWS Organization accounts.
/aws
aws
Structured guidance for AWS CloudFront distributions, WAF web ACLs, Lambda@Edge, CloudFront Functions, Firewall Manager multi-account enforcement, and IAM/IRSA patterns. Covers OAC, cache policies, security headers, managed rule groups, rate limiting, FMS FIRST/MIDDLE/LAST ownership model, and production-ready Terraform generation.
/azure
azure
Azure identity (Workload Identity, OIDC, Entra ID), resource tagging, AKS platform patterns, RBAC scoping, and production-readiness review — with Terraform generation.
/chaos
chaos
Design, run, and debug Chaos Engineering experiments on Kubernetes using Litmus Chaos v3 and Chaos Mesh v2. Covers fault injection (pod-delete, network-loss, CPU stress, node-drain), steady-state hypothesis probes, GameDay runbooks, scheduled experiments, DORA feedback loop, and RBAC setup. Use when asked to "inject a pod fault", "run a GameDay", "schedule chaos experiments", or "debug why my ChaosEngine is stuck".
/checkov
checkov
Bootstrap Checkov on a developer laptop, run static or plan-level Terraform security scanning for AWS/Azure/GCP/EKS, resolve private GitHub modules via gh CLI, generate pre-commit hooks, produce multi-format output (cli/json/sarif/junit), and fix violations with AI-generated patches. Use when asked to "scan my Terraform", "run checkov", "check my IaC for security issues", "set up checkov pre-commit", or "fix checkov findings".
Make any song you can imagine
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