LLM Mart Basic
@llm-mart · Joined Jun 2026
Out-of-core tabular analytics with Vaex — memory-mapped HDF5/Arrow/Parquet via vaex.open, lazy virtual columns, delayed single-pass aggregations on billion-row tables, binned histograms/heatmaps, and vaex.ml transformers on one machine. Vaex is in minimal-maintenance mode (vaex-c
Access the AlphaFold DB of 240M+ AI-PREDICTED protein structures (v6, plus precomputed homodimer/heterodimer complexes) — retrieve models by UniProt accession, download PDB/mmCIF files, and analyze prediction confidence metrics (pLDDT, PAE). Use when a UniProt ID needs a computat
Search and retrieve preprints from arXiv via the Atom API by keywords, authors, arXiv IDs, date ranges, or subject categories. Use when finding or fetching papers in physics, mathematics, computer science, quantitative biology, quantitative finance, statistics, electrical enginee
Query BindingDB for measured protein-ligand binding affinities (Ki, Kd, IC50, EC50) via its keyless REST API or the full TSV download, searching by target (UniProt ID), compound (SMILES), or pathogen. Use when looking up experimental binding constants, profiling inhibitors of a p
Search the bioRxiv preprint server and retrieve paper metadata or download PDFs via its API. Use when finding life sciences preprints by keywords, authors, DOI, date ranges, or categories, or when conducting a biology literature review of not-yet-peer-reviewed work. Part of the A
Access the BRENDA enzyme database via its SOAP API to retrieve kinetic parameters (Km, kcat, Ki), reaction equations, organism data, and substrate-specific enzyme information indexed by EC number. Use when looking up enzyme kinetics, turnover numbers, or substrate specificity for
Query cBioPortal via its keyless REST API for cancer genomics across TCGA, GENIE, MSK-IMPACT and hundreds of studies — somatic mutations, copy-number alterations (GISTIC), mRNA/protein expression, structural variants, and patient-level clinical/survival data. Use when asked how o
Query ChEMBL via the chembl_webresource_client Python client for curated bioactive molecules and drug-like compound libraries at scale — search compounds by structure or physicochemical properties, retrieve bioactivity measurements (IC50, Ki, EC50), and find inhibitors of a targe
Query ClinicalTrials.gov via its API v2 to search trials by condition, drug, location, recruitment status, or phase and retrieve trial details by NCT ID. Use when finding interventional or observational studies, checking trial status and eligibility for patient matching, or expor
Access ClinPGx pharmacogenomics data (the successor to PharmGKB) to query gene-drug interactions, CPIC/DPWG dosing guidelines, drug labels, and pharmacogene records. Use when interpreting pharmacogenes (CYP2D6, CYP2C19, TPMT, DPYD, SLCO1B1), looking up genotype-guided drug dosing
Query NCBI ClinVar via the E-utilities API or FTP for the clinical significance (pathogenicity) of human germline genetic variants, searching by gene, variant, condition, or genomic position and interpreting ACMG/AMP classifications and review-status star ratings. Use when assess
Access the COSMIC catalogue of somatic mutations in cancer to query somatic mutations, the Cancer Gene Census, mutational signatures, and gene fusions (authentication required). Use when curating known cancer driver genes, looking up recurrent somatic mutations in a gene, or inte
Use when conducting security assessments — OWASP Top 10 / API / LLM, CWE Top 25, CVSS scoring — auditing PHP/TYPO3, APIs, frontend, Terraform/K8s/Docker IaC, AWS cloud, AI agent configs, or scanning dependencies.
Look up and apply Python builtin and standard-library time and space complexity when analyzing code, reviewing performance, or comparing operations. Includes implementation and version qualifications. Use for complexity analysis, not general Python syntax questions.
Designs and reviews tests for every complexity, behavioral, and performance claim in documentation. Use when adding or changing claims, auditing claim or API coverage, or creating module complexity tests.
Updates this repository's supported Python range when an old version reaches EOL or a new final version is released. Covers package metadata, CI pins, version references, documentation, translations, public API manifests, tests, and lockfile verification.
Run a user-authored playbook from the vault: a multi-step guided procedure. Lists available global and local playbooks, selects one by trigger, and drives its steps in order — spawning per-step sub-agents or running inline, pausing at review gates.
Cut a booping plugin release — verify the version bump against the last published tag, draft public-voiced release notes, merge the release branch into master, tag, and publish the GitHub release. Use when cutting a vX.Y.Z release of this repo.
Expert guide for long-term episodic memory integration (Mem0, Letta/MemGPT, Zep) and unified context management for autonomous AI agents / Panduan ahli untuk integrasi memori episodik jangka panjang dan manajemen konteks agen AI otonom.
Master ideation protocol & architectural orchestrator with Modern Web Guidance. Validates design ideas and orchestrates all specialized vibes-plug skills before coding begins / Protokol ideasi utama & orkestrator arsitektur dengan Modern Web Guidance. Memvalidasi ide desain dan m
/requirements
Requirements
Generate requirements from goal and research
/research
Research
Run or re-run research phase for current spec
/start
Start
Smart entry point that detects if you need a new spec or should resume existing
/status
Status
Show all specs and their current status
/switch
Switch
Switch active spec
/tasks
Tasks
Generate implementation tasks from design
/triage
Triage
Decompose a large feature into multiple dependency-aware specs (epic triage)
/tree-ring-update
Tree ring update
Check for or install a verified Tree Ring Memory CLI update without changing installation scope
/README
README
This directory contains the command implementations for the fast-agent CLI.
/close
Close
They operate it without you.
/outcome
Outcome
Promised, measured, accepted. A number nobody signed is claimed, not delivered.
/prep
Prep
Prepare the meeting. One page from the record.
/receipts
Receipts
Find the receipt. A dated line, or it did not happen.
/trust
Trust
Diagnose trust. Process gap, or they stopped trusting you.
/awesome-docs
awesome-docs
Generate, convert, and maintain animated GitHub-safe Markdown documents with animated SVG diagrams. Covers four SVG patterns (architecture flow, lifecycle loop, field carousel, timeline phases), guided interview for any doc type (README, architecture guide, runbook, API reference, tutorial, RFC, post-mortem, how-it-works, or custom), converting existing plain Markdown, diffing for stale diagrams, quality auditing, local preview, and multi-platform export. Use when asked to "create a README for X", "write an architecture doc", "animate this guide", "convert my doc to animated", "check if my diagrams are stale", or "export my doc for Confluence".
/aws-profile
aws-profile
AWS profile management for MCP servers — discover profiles across SSO, Granted, and assumed-role chains, check credential TTL, switch profiles across VS Code and Claude Code MCP configs, and scan AWS Organization accounts.
/aws
aws
Structured guidance for AWS CloudFront distributions, WAF web ACLs, Lambda@Edge, CloudFront Functions, Firewall Manager multi-account enforcement, and IAM/IRSA patterns. Covers OAC, cache policies, security headers, managed rule groups, rate limiting, FMS FIRST/MIDDLE/LAST ownership model, and production-ready Terraform generation.
/azure
azure
Azure identity (Workload Identity, OIDC, Entra ID), resource tagging, AKS platform patterns, RBAC scoping, and production-readiness review — with Terraform generation.
/chaos
chaos
Design, run, and debug Chaos Engineering experiments on Kubernetes using Litmus Chaos v3 and Chaos Mesh v2. Covers fault injection (pod-delete, network-loss, CPU stress, node-drain), steady-state hypothesis probes, GameDay runbooks, scheduled experiments, DORA feedback loop, and RBAC setup. Use when asked to "inject a pod fault", "run a GameDay", "schedule chaos experiments", or "debug why my ChaosEngine is stuck".
/checkov
checkov
Bootstrap Checkov on a developer laptop, run static or plan-level Terraform security scanning for AWS/Azure/GCP/EKS, resolve private GitHub modules via gh CLI, generate pre-commit hooks, produce multi-format output (cli/json/sarif/junit), and fix violations with AI-generated patches. Use when asked to "scan my Terraform", "run checkov", "check my IaC for security issues", "set up checkov pre-commit", or "fix checkov findings".
Make any song you can imagine
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