LLM Mart Basic
@llm-mart · Joined Jun 2026
Assess the scientific integrity and trustworthiness of publications before relying on their findings. Use this skill whenever evaluating a paper for a workflow, citing a study, building an analysis on published methods, or when a user asks about the reliability of a study. Checks
Evaluate ENCODE experiment quality using standard metrics and audit flags. Use when the user asks about data quality, wants to filter for high-quality experiments, needs to interpret quality metrics (FRiP, NSC, RSC, NRF, IDR, TSS enrichment, fragment size), wants to understand EN
Discover and characterize regulatory elements (enhancers, promoters, silencers, insulators, super-enhancers) using ENCODE data and the cCRE catalog. Use when the user wants to find candidate regulatory elements, identify active enhancers in a tissue, map promoter states, classify
Generate publication-ready methods sections, figure legends, supplementary tables, and data availability statements from ENCODE analysis provenance. Implements the scientific documentation standards requiring complete metadata reporting. Use when the user needs to write methods,
Conduct rigorous cross-study meta-analysis of scRNA-seq data from ENCODE, integrating multiple single-cell transcriptomic datasets for a tissue/cell type. Use when the user wants to answer "what cell types exist in my tissue and what genes define them?" by combining scRNA-seq dat
Search and explore ENCODE Project genomics data. Use when the user wants to find experiments, files, or explore what data is available for specific assays, organs, cell lines, or targets.
Set up the ENCODE Toolkit server connection. Use when the user needs help installing, configuring, or troubleshooting the ENCODE connector.
Find and work with ENCODE single-cell genomics data including scRNA-seq and scATAC-seq. Use when the user asks about single-cell experiments, cell type resolution, clustering from ENCODE data, deconvolution of bulk signals using single-cell references, or comparing single-cell vs
Track ENCODE experiments locally with publications, citations, and provenance. Use when the user wants to build a collection of experiments, manage citations, compare experiments, or track data provenance.
Query the UCSC Genome Browser REST API to retrieve regulatory tracks, DNA sequences, cCRE annotations, TF binding clusters, and track schemas for any genomic region. Use when the user wants to look up what regulatory elements exist at a genomic locus, retrieve DNA sequence under
Annotate genetic variants (GWAS hits, eQTLs, rare variants) with ENCODE functional data to interpret non-coding variation. Use when the user has variants of interest and wants to understand their regulatory context, identify causal variants from GWAS loci, assess variant impact o
Comprehensive guide for visualizing ENCODE data including deeptools heatmaps, IGV screenshots, UCSC track hubs, and publication-quality plots. Use when users need to create visualizations of ChIP-seq signal, peak landscapes, genome browser views, or any visual representation of E
Make software health, failure, degradation, and recovery visible through useful observability and diagnostics. Use when adding logs, metrics, traces, health checks, alerts, incident signals, or operational feedback.
Inspect the real repository, environment, dependencies, and runtime evidence before designing or changing software. Use for greenfield construction, unfamiliar codebases, uncertain behavior, or any task where assumptions could create rework.
Reflect on failures, incidents, reviews, and completed software work to turn evidence into durable tests, guardrails, documentation, and process improvements.
Debug software by making failures visible, reproducing them, finding contributing causes, and adding durable regression protection. Use for bugs, failing tests, incidents, regressions, flaky behavior, and unexplained production errors.
Improve software continuously through small, safe, behavior-preserving changes that reduce maintenance cost. Use for refactoring, cleanup, technical debt, naming, duplication, dead code, or post-change polish.
Choose simple, maintainable software designs by removing speculative complexity, comparing alternatives, and making explicit tradeoffs. Use for architecture, API, data-model, dependency, and scope decisions.
Implement software through small, repeatable, integrated vertical slices with clear exit criteria and honest verification. Use when a design is understood and code needs to be built or changed.
Review software with careful attention to correctness, maintainability, security, operations, and meaningful detail. Use for diffs, branches, pull requests, architecture decisions, or final quality checks.
/close-out
Close out
Close a finished session: sweep for unfinished work, ask once, land, file the follow-ups, hand off, tell the sessions that depend on this one, then archive.
/handoff
Handoff
Write the repository handoff file for the next session, and record any durable learning.
/land
Land
Merge an approved pull request, clean up its worktree and branch, then check whether a release is due.
/plan
Plan
Turn a topic or issue into a plan the reviewer approves in the native plan pane.
/research
Research
Answer a research question with parallel read-only gatherers and one synthesized digest.
/review
Review
Review the branch's diff in two fresh contexts — scope against the spec, then quality — and report findings only.
/audit-infra
Audit infra
Audit infra security: secrets, deps, CI/CD, webhooks, AI/skill files
/audit-solana
Audit solana
Audit Solana program code for exploitable bugs and write a findings report
/benchmark
Benchmark
Compare per-instruction CU with the stored baseline to catch regressions
/build-app
Build app
Build the web client (Next.js, Vite, React) and check env, types and bundle
/build-program
Build program
Build Solana programs (Anchor, Pinocchio, native), incl. verifiable builds
/build-unity
Build unity
Build the Unity project in batchmode for WebGL, desktop, Android or PSG1
/cleanup
Cleanup
Turn a solana-ai-kit fork into a project: set up CLAUDE.md, remove kit files
/commit-claude-config
Commit claude config
Un-ignore and commit the kit config dir, instruction file, .mcp.json and .gitmodules
/debug-user-tx
Debug user tx
Replay a user's failing transaction on forked state and map the error to source
/deploy
Deploy
Deploy a program to devnet, or to mainnet after the user's explicit go-ahead
/diff-review
Diff review
Review the branch diff for Solana security issues, CU waste and AI slop
/doctor
Doctor
Read-only check of toolchain and kit config, with one fix-it command per failure
/dream
Dream
Consolidate MEMORY.md and Project Learnings: dedupe, resolve conflicts, prune
/explain-code
Explain code
Explain Solana code with a diagram and a step-by-step walkthrough
Make any song you can imagine
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