LLM Mart Basic
@llm-mart · Joined Jun 2026
Track ENCODE experiments locally with publications, citations, and provenance. Use when the user wants to build a collection of experiments, manage citations, compare experiments, or track data provenance.
Query the UCSC Genome Browser REST API to retrieve regulatory tracks, DNA sequences, cCRE annotations, TF binding clusters, and track schemas for any genomic region. Use when the user wants to look up what regulatory elements exist at a genomic locus, retrieve DNA sequence under
Annotate genetic variants (GWAS hits, eQTLs, rare variants) with ENCODE functional data to interpret non-coding variation. Use when the user has variants of interest and wants to understand their regulatory context, identify causal variants from GWAS loci, assess variant impact o
Comprehensive guide for visualizing ENCODE data including deeptools heatmaps, IGV screenshots, UCSC track hubs, and publication-quality plots. Use when users need to create visualizations of ChIP-seq signal, peak landscapes, genome browser views, or any visual representation of E
Make software health, failure, degradation, and recovery visible through useful observability and diagnostics. Use when adding logs, metrics, traces, health checks, alerts, incident signals, or operational feedback.
Inspect the real repository, environment, dependencies, and runtime evidence before designing or changing software. Use for greenfield construction, unfamiliar codebases, uncertain behavior, or any task where assumptions could create rework.
Reflect on failures, incidents, reviews, and completed software work to turn evidence into durable tests, guardrails, documentation, and process improvements.
Debug software by making failures visible, reproducing them, finding contributing causes, and adding durable regression protection. Use for bugs, failing tests, incidents, regressions, flaky behavior, and unexplained production errors.
Improve software continuously through small, safe, behavior-preserving changes that reduce maintenance cost. Use for refactoring, cleanup, technical debt, naming, duplication, dead code, or post-change polish.
Choose simple, maintainable software designs by removing speculative complexity, comparing alternatives, and making explicit tradeoffs. Use for architecture, API, data-model, dependency, and scope decisions.
Implement software through small, repeatable, integrated vertical slices with clear exit criteria and honest verification. Use when a design is understood and code needs to be built or changed.
Review software with careful attention to correctness, maintainability, security, operations, and meaningful detail. Use for diffs, branches, pull requests, architecture decisions, or final quality checks.
Author a greenfield build blueprint in four gated stages — business logic, tech stack, logic-to-stack mapping, and a phase plan — each requiring explicit user approval before the next. Use when building a new project or a substantial new subsystem from scratch.
Step 0 of consequential software work under Monozukuri. Classify the task, assess its risk tier, choose execute or sensei mode, and compose the sequence of Monozukuri skills and the Definition of Done for it. Skip for trivial one-line edits, pure questions, and throwaway scripts.
Clarify software goals, constraints, stakeholders, and risks before consequential design or implementation work. Use for greenfield ideas, ambiguous requirements, architecture decisions, or changes where misunderstanding would be costly.
Prevent software mistakes through strong boundaries, safe defaults, meaningful tests, and mechanically enforced invariants. Use for TDD, validation, schemas, authorization, edge cases, regression coverage, or reliability-sensitive behavior.
Prepare software for responsible release, migration, deployment, rollback, and handoff with evidence about compatibility, health, ownership, and recovery.
Use when creating or updating AGENTS.md files, .github/copilot-instructions.md, or other AI agent rule files, onboarding AI agents to a project, standardizing agent documentation, or when anyone mentions AGENTS.md, agent rules, project onboarding, or codebase documentation for AI
Record a decision, document existing code, or file a supplied research material. Modes: document decision (ADR, RFC, or rule), document code (spec, doc, guide, or scenario for existing behavior), document research (only when a finished report or one external material is already i
First-time Archcore setup. Wires the host (MCP config, hooks, CLAUDE.md/AGENTS.md managed block), measures the authored context the repo already holds, then composes a first-day seed — stack rule, run guide, data-model, integrations, config, entry points, public surface, a linked
/inspect
Inspect
`crabbox inspect` prints the full record for a single lease: state, provider,
/job
Job
Run named, repo-local jobs defined in your Crabbox config.
/list
List
`crabbox list` shows the current Crabbox machines (leases) for a provider. It is
/login
Login
`crabbox login` authenticates the CLI against a coordinator, stores the
/logout
Logout
`crabbox logout` clears the stored broker token from your user config so the CLI
/logs
Logs
`crabbox logs` prints the retained command output for a recorded run.
/marketplace
Marketplace
`crabbox marketplace` previews the Crabbox credits gateway: one Crabbox billing
/media
Media
`crabbox media` turns a recorded desktop video into lightweight review
/open
Open
`crabbox open` prepares an existing SSH-capable lease for an external editor.
/pause
Pause
`crabbox pause` pauses a single lease, freeing the remote compute while
/pond
Pond
`crabbox pond` is the cross-provider peer-discovery and lifecycle surface for a
/pool
Pool
`crabbox pool` contains machine-pool helpers. `pool list` keeps the older
/ports
Ports
`crabbox ports` bridges provider-native port publishing for an existing Crabbox
/prewarm
Prewarm
`crabbox prewarm` leases a reusable box and prepares it for test runs. For
/providers
Providers
`crabbox providers` prints the provider capability matrix that the CLI compiles
/receipt
Receipt
`crabbox receipt <run-id>` retrieves a brokered run's committed terminal
/results
Results
`crabbox results` prints the structured test summary attached to a recorded
/resume
Resume
`crabbox resume` resumes a lease previously paused with [`pause`](pause.md),
/run
Run
`crabbox run` syncs the current dirty checkout to a box, runs a command there,
/screenshot
Screenshot
`crabbox screenshot` captures a single PNG from a desktop lease without opening a
Make any song you can imagine
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