GitHub collection
xuzhougeng/wisp-science
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25 skills imported from this repository.
agent-infini
Use the InfiniSynapse CLI (`agent_infini`) for multi-turn AI data-analysis tasks, database/RAG context, and task workspace files. Use when the user mentions InfiniSynapse, agent_infini, database or RAG analysis, or asks to delegate analysis through InfiniSynapse.
analysis-workflow
Organize multi-step scientific analyses into reproducible, self-contained modules. Use for workflows such as QC→PCA→DEG→GSEA that produce scripts, inputs, figures, tables, and methods. Creates a stable module layout, records exact inputs/parameters/package and database versions i
audit-biomedical-paper-evidence
审读用户提供的生命科学或生物医学论文、PDF、摘要、正文、figure、panel、caption 或截图，定位核心科学问题，逐图解释实验设计和证据链，审计机制、因果性、rescue、方法边界、正交验证与局限。材料缺失时请求补充或转介检索；不提供医疗建议、临床决策或可直接执行的湿实验 SOP。
browser-use
Use this skill to drive Wisp Browser Runtime sessions (shared daily Chrome or workspace Chrome) — open pages, read them, click, fill and submit forms, navigate, switch tabs, or scrape content that needs the user's existing cookies and login state. Triggers when the user asks to d
compute-env-setup
Set up and validate a reproducible Python or R environment on a Wisp execution context. Use for a selected local, WSL, or direct SSH context when installing scientific packages, configuring caches, recording interpreter activation, or producing an environment smoke test. Do not u
custom-theme
Author a Wisp custom theme CSS file that uses documented tokens and import constraints. Use when the user wants a custom look, hide the paragraph lead bar, restyle chat Markdown, override colors, or import a stylesheet under Settings → Appearance.
distill-concept-books
将概念、理论或分析方法类图书蒸馏为证据可追溯、经人工门禁审核且不暴露书名、作者、出版社等来源身份的任务型 Skill 候选。用于新建或恢复图书蒸馏、以本地 Tesseract 扫描 DOCX 全部内嵌图像或 Poppler 渲染的扫描 PDF 全页、建立 source map 与 evidence/claim/relation/capability rule、用第一性原理重构可迁移方法，以及按权威 task contract 防止上下文压缩后的产品任务漂移；仅在本元 Skill 自身的 owning distillation 中路由其 Gate 4 评测
figure-composer
Compose or improve a publication-grade multi-panel scientific figure from a claim, concrete data paths, or an existing image. Use for figure outlining, parallel panel rendering, exact-grid composition, visual inspection, and adversarial figure review. Use figure-style for one sta
figure-style
Correctness and legibility checklist for publication figures, plus a matplotlib sidecar. Load before plotting anything and call `apply_figure_style()` (role-mapped font ladder, outward ticks, frameless legends, 300-dpi saves, CJK-safe fonts). Covers data fidelity, label budgets,
indication-dossier
Build a sourced research dossier for one therapeutic indication — patient population, epidemiology, disease biology, standard of care, regulatory path, and landmark trials. Use when the user asks for an indication overview, disease landscape, or trial-design background.
journal-club-ppt
Use this skill whenever the user provides a scientific paper PDF and asks for a group-meeting literature report, journal-club slides, 文献汇报PPT, 组会PPT, paper presentation, article walkthrough, or to explain a paper with PowerPoint. The skill first reconstructs the paper's scientifi
literature-review
Retrieve, verify, and synthesize scientific literature. Use for seminal-paper lookups, evidence summaries, method comparisons, and gap analyses. Every citation must come from a live lookup, never from memory; retractions are checked; the deliverable is argued prose with resolvabl
local-env-setup
Configure the local wisp-science runtime — uv/Python bootstrap, Node+scimaster-cli for bear-* literature skills, pixi for bioinformatics multi-env analysis. Detect mainland-China network and apply mirrors. Use when Capabilities shows missing Python/uv/Node/sci/pixi, bootstrap err
paper-narrative
Judge and reshape the story told by a manuscript and its figure deck. Use when revising paper structure, testing whether Figure 1 is a hook, ordering figures, moving panels, identifying missing analyses, or defining the claim passed to figure-composer.
pdf-explore
Use this skill when the user has attached a PDF, paper, report, or other document and the answer needs its content: summarize a section, compare sections, read specific pages, check the table of contents, or read a value off a figure. The `read` tool cannot parse PDF binary — pyt
pixi-environment-builder
Use when creating, migrating, or debugging pixi environments, especially for scientific Python, bioinformatics, single-cell analysis, CUDA/PyTorch, Jupyter/VS Code kernels, conda-to-pixi migration, or conda + PyPI mixed dependency issues.
probe-compute-environment
Inspect a registered execution server before compute planning and interpret its persisted capability profile. Use when a server is added, when the user clicks Probe, before enabling an unfamiliar SSH/WSL resource, or when deciding whether GPU, sudo/root, a scheduler, Python, R, c
public-data-access
Plan, configure, validate, and document portable public-bioinformatics data acquisition. Use for GEO/GSE/GDS, SRA/ENA, TCGA/GDC, GTEx, DepMap, public expression matrices, raw reads, release files, manifests, resumable downloads, and reusable local caches. Keep the workflow provid
remote-compute-ssh
Submit recoverable SSH-direct research Runs with live progress cards and model-free monitoring.
self-awareness
Wisp-science's actual agent tool surface and runtime boundaries. Load this when deciding which Wisp tool can perform a task, checking whether Python can reach agent or desktop capabilities, choosing between interactive analysis and persisted Runs, or answering questions about del
singlecell-qc
Use when designing, reviewing, or implementing single-cell RNA-seq QC in Python or R with a human-in-the-loop, data-driven approach. Trigger for scRNA QC metrics, per-sample diagnosis, threshold discussion, mitochondrial/ambient/doublet assessment, MAD vs fixed cutoffs, or refact
skill-creator
Create, update, validate, and evaluate Wisp skills. Use when authoring a project-local or installable skill, refining its trigger description, adding deterministic scripts or Python sidecars, or testing whether another Agent can follow the workflow.
social-note
Turn a scientific conversation, paper takeaway, or figure story into paste-ready social copy. Use when the user asks for 小红书文案, a Xiaohongshu note, 微信/朋友圈, 公众号草稿, a tweet, Twitter/X copy, or share-to-social text from a Wisp session. Ask which platform unless the user already name
word-zotero-citations
Build, audit, authorize, recover, or finalize dynamic Zotero citations and bibliographies in Microsoft Word DOCX files with a protected-source, digest-bound workflow. Use for Word–Zotero citation conversion, static OOXML citation audits, mocked/offline validation, Refresh authori