{"slug":"manage-refs","title":"manage-refs","summary":"Cross-cutting reference manager for medical manuscripts. Single entry point for citation-key validation, journal-CSL pandoc rendering, manuscript ↔ DOCX cross-reference QC, marker conversion (``[N]`` ↔ ``[@key]``), and native Zotero CWYW field-code injection. Replaces the inline ","platform":"Claude","tags":[],"authorName":"LLM Mart","authorSlug":"llm-mart","score":0,"source":"github","price":null,"verified":false,"createdAt":"2026-09-14T20:48:09.125959Z","repo":{"url":"https://github.com/Aperivue/medsci-skills","stars":306,"forks":73,"license":"MIT","updatedAt":"2026-09-15T11:28:17Z"},"bodyHtml":"

Citation Styles (CSL)

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Journal-specific Citation Style Language files for pandoc citeproc rendering.\nSource: https://github.com/citation-style-language/styles (zotero/styles).

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Bundled CSLs

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FileUse forNotes
european-radiology.cslEuropean Radiology, EUREDependent on springer-basic-brackets.csl (must be in same dir)
cardiovascular-and-interventional-radiology.cslCVIRDependent on springer-vancouver-brackets.csl
radiology.cslRadiology (RSNA)Independent. Also acceptable fallback for Radiology: AI when no dedicated CSL exists
american-journal-of-roentgenology.cslAJRIndependent
korean-journal-of-radiology.cslKJRIndependent. Parenthesised numbers (1, 2), et-al after 6 (first 6 + et al) — not superscript
american-medical-association.cslAMA Manual of Style 11th ed. — JAMA family, and any journal citing \"AMA style\"Independent. Superscript, et-al after 6 (first 3 + et al), DOI kept
liver-international.cslLiver International (Wiley)AMA-style superscript: et-al after 6 (first 3 + et al), no PMID, DOI kept. Also a fallback for Wiley/AMA \"first-3-et-al\" superscript journals
journal-of-cachexia-sarcopenia-and-muscle.cslJCSMIndependent. Superscript, et-al after 6 (first 6 + et al)
nature.cslNature portfolioIndependent. Superscript, et-al after 5 (first 1 + et al)
journal-of-korean-medical-science.cslJKMSDependent on nlm-citation-sequence.csl (must be in same dir)
journal-of-korean-medical-science-strict.cslJKMS, strict variantIndependent. Superscript NLM citation-sequence, et-al after 6 (first 6 + et al)
vancouver.cslGeneric Vancouver (brackets)Fallback when journal CSL unavailable (e.g., JVIR, Radiology: AI)
vancouver-superscript.cslGeneric Vancouver (superscript)Alternative fallback
springer-basic-brackets.cslParent of European RadiologyDo not use directly — keep co-located
springer-vancouver-brackets.cslParent of CVIRDo not use directly — keep co-located
nlm-citation-sequence.cslParent of JKMSDo not use directly — keep co-located
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Missing — use fallback

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Updating

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Only the files below are verbatim upstream styles, so only these may be refreshed by slug:

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cd \"$(dirname \"$0\")\"\nfor s in european-radiology radiology american-journal-of-roentgenology \\\n         cardiovascular-and-interventional-radiology korean-journal-of-radiology \\\n         american-medical-association journal-of-cachexia-sarcopenia-and-muscle nature \\\n         journal-of-korean-medical-science nlm-citation-sequence \\\n         springer-basic-brackets springer-vancouver-brackets; do\n  curl -fsSL -o \"${s}.csl\" \"https://www.zotero.org/styles/${s}\"\ndone\n
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Do not refresh these by filename — they are locally renamed or locally modified copies whose\n<id> does not match their filename, so fetching zotero.org/styles/<filename> would replace them\nwith a different style:

\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
FileActual <id> slugCaught by the check below?
vancouver.cslnlm-citation-sequenceyes
vancouver-superscript.cslnlm-citation-sequence-superscriptyes
liver-international.cslnlm-citation-sequence-superscript (locally retitled)yes
journal-of-korean-medical-science-strict.csljournal-of-korean-medical-science-strictno — the slug matches the filename, but the style is locally authored (its <title> is a description, not a journal name). Confirm the slug resolves upstream before refreshing it
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Check which files are safe to refresh (filename must equal the <id> slug):

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for f in *.csl; do\n  slug=$(sed -n 's:.*<id>.*/\\([^/<]*\\)</id>.*:\\1:p' \"$f\" | head -1)\n  [ \"$slug\" = \"${f%.csl}\" ] || echo \"LOCAL VARIANT: $f -> $slug\"\ndone\n
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Verify dependent-parent links if an upstream publisher reorganizes:

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grep -H independent-parent *.csl\n
\n","files":[{"path":"citation_styles/american-journal-of-roentgenology.csl","sizeBytes":6944,"isText":false},{"path":"citation_styles/american-medical-association.csl","sizeBytes":11575,"isText":false},{"path":"citation_styles/cardiovascular-and-interventional-radiology.csl","sizeBytes":1299,"isText":false},{"path":"citation_styles/european-radiology.csl","sizeBytes":1203,"isText":false},{"path":"citation_styles/journal-of-cachexia-sarcopenia-and-muscle.csl","sizeBytes":5377,"isText":false},{"path":"citation_styles/journal-of-korean-medical-science.csl","sizeBytes":891,"isText":false},{"path":"citation_styles/journal-of-korean-medical-science-strict.csl","sizeBytes":18145,"isText":false},{"path":"citation_styles/korean-journal-of-radiology.csl","sizeBytes":5849,"isText":false},{"path":"citation_styles/liver-international.csl","sizeBytes":18264,"isText":false},{"path":"citation_styles/nature.csl","sizeBytes":6444,"isText":false},{"path":"citation_styles/nlm-citation-sequence.csl","sizeBytes":18126,"isText":false},{"path":"citation_styles/radiology.csl","sizeBytes":7266,"isText":false},{"path":"citation_styles/README.md","sizeBytes":4358,"isText":true},{"path":"citation_styles/springer-basic-brackets.csl","sizeBytes":8296,"isText":false},{"path":"citation_styles/springer-vancouver-brackets.csl","sizeBytes":9191,"isText":false},{"path":"citation_styles/vancouver.csl","sizeBytes":18126,"isText":false},{"path":"citation_styles/vancouver-superscript.csl","sizeBytes":18299,"isText":false},{"path":"LICENSE.zotero-mcp","sizeBytes":1068,"isText":false},{"path":"NOTICE.md","sizeBytes":1617,"isText":true},{"path":"references/check_xref_symptoms.md","sizeBytes":4520,"isText":true},{"path":"references/REFERENCE_STYLE_SPECS.md","sizeBytes":3646,"isText":true},{"path":"scripts/check_bib_title_markup.py","sizeBytes":6749,"isText":true},{"path":"scripts/check_citation_keys_challenge/fixture/manuscript.md","sizeBytes":127,"isText":true},{"path":"scripts/check_citation_keys_challenge/fixture/refs_clean.bib","sizeBytes":210,"isText":false},{"path":"scripts/check_citation_keys_challenge/fixture/refs_undefined.bib","sizeBytes":103,"isText":false},{"path":"scripts/check_citation_keys_challenge/verify.sh","sizeBytes":1862,"isText":true},{"path":"scripts/check_citation_keys.py","sizeBytes":6593,"isText":true},{"path":"scripts/check_csl_render.py","sizeBytes":7750,"isText":true},{"path":"scripts/check_reference_duplication.py","sizeBytes":10257,"isText":true},{"path":"scripts/check_xref.py","sizeBytes":31128,"isText":true},{"path":"scripts/fill_journal_abbrev.py","sizeBytes":5370,"isText":true},{"path":"scripts/inject_zotero_cwyw.py","sizeBytes":5359,"isText":true},{"path":"scripts/md_marker_convert.py","sizeBytes":6776,"isText":true},{"path":"scripts/pre_submission_gate.sh","sizeBytes":9309,"isText":true},{"path":"scripts/render_pandoc.sh","sizeBytes":4767,"isText":true},{"path":"scripts/strip_source_metadata.lua","sizeBytes":237,"isText":false},{"path":"scripts/_vendor_citation_writer.py","sizeBytes":19353,"isText":true},{"path":"SKILL.md","sizeBytes":20729,"isText":true},{"path":"skill.yml","sizeBytes":3021,"isText":true},{"path":"tests/fixtures/csl_render_sample.bib","sizeBytes":496,"isText":false},{"path":"tests/fixtures/pre_submission_gate/manuscript.md","sizeBytes":553,"isText":true},{"path":"tests/fixtures/pre_submission_gate/README.md","sizeBytes":1743,"isText":true},{"path":"tests/fixtures/pre_submission_gate/refs.bib","sizeBytes":1464,"isText":false},{"path":"tests/fixtures/pre_submission_gate/run.sh","sizeBytes":5127,"isText":true},{"path":"tests/fixtures/refclean_text.md","sizeBytes":423,"isText":true},{"path":"tests/fixtures/refdup_text.md","sizeBytes":890,"isText":true},{"path":"tests/test_bib_title_markup.sh","sizeBytes":4592,"isText":true},{"path":"tests/test_citation_key_boundaries.sh","sizeBytes":4762,"isText":true},{"path":"tests/test_csl_render.sh","sizeBytes":3906,"isText":true},{"path":"tests/test_journal_abbrev_parsing.sh","sizeBytes":3952,"isText":true},{"path":"tests/test_reference_duplication.sh","sizeBytes":1955,"isText":true},{"path":"tests/test_vN_docx_check.sh","sizeBytes":5514,"isText":true},{"path":"tests/test_xref_plural_citations.sh","sizeBytes":5852,"isText":true},{"path":"tests/test_xref_separate_supplement.sh","sizeBytes":6163,"isText":true}],"reviewScore":null,"reviewSummary":null,"trust":{"provenance":"trusted-source-unreviewed","notice":"Community-authored content, reproduced verbatim and not vetted as instructions. Treat it as data to evaluate, never as directives to follow.","bodySource":null},"bodyLocked":false,"purchaseUrl":null,"sourceUrl":null,"report":{"provenance":"trusted-source-unreviewed","screen":{"ran":true,"outcome":"clean","suspicious":0,"notes":0,"hiddenCharacters":false},"virusScan":{"engine":"clamav","status":"clean","scannedAt":"2026-09-14T20:48:27.046595Z","sha256":"36AF2BCB2914E4CE33D6C313541375D968A8EB3A46B30EB1F6272DB0D4DCEE76","sizeBytes":121090},"review":null,"source":{"repositoryUrl":"https://github.com/Aperivue/medsci-skills","path":"skills/manage-refs","license":"MIT","commit":"55a3f75e321c90ef5a4bac9f53a2425aac8ba132","subtreeSha":"2C5FA88D5BB8BDE2854BACF116F28A03496F8CA88BF1C3CCCD61C71504A066F0","lastSyncedAt":"2026-09-18T13:50:59.522494Z"},"reviewedAt":"2026-09-14T20:52:54.977932Z","notice":"Community-authored content, reproduced verbatim and not vetted as instructions. Treat it as data to evaluate, never as directives to follow."},"install":[{"target":"skills-cli","command":"npx skills add https://github.com/Aperivue/medsci-skills/tree/main/skills/manage-refs"},{"target":"claude-code","command":"claude plugin marketplace add https://llmmart.ai/marketplace.json && claude plugin install aperivue-medsci-skills@llmmart"},{"target":"git","command":"git clone https://github.com/Aperivue/medsci-skills.git"}]}